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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RQQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVKTLHPAVHAGILARNIP
EDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASK
DKDTSVETRRHLALKAFTHTAQYDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCD
ALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALS
DICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKN
IVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGV
KRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAP
SGSAADEVVIEACNELGITLIHTNLRLFHH

The query sequence (length=590) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2b1g:A 590 590 1.0000 1.0000 1.0000 0.0 2b1g:D, 2b1i:A, 2b1i:B, 1g8m:A, 2iu0:B, 2iu3:B, 1m9n:A, 1m9n:B, 1oz0:A, 1oz0:B, 1thz:A, 1thz:B
2 1p4r:A 589 588 0.8356 0.8370 0.8384 0.0 1p4r:B, 1pkx:A, 1pkx:C, 1pl0:A, 1pl0:B, 1pl0:C, 1pl0:D, 5uy8:A, 5uy8:B, 5uy8:C, 5uy8:D, 5uz0:A, 5uz0:B, 5uz0:C, 5uz0:D
3 7mgq:A 602 602 0.6169 0.6047 0.6047 0.0 7mgq:B, 7mgq:C, 7mgq:D
4 3zzm:A 520 481 0.2814 0.3192 0.3451 2.82e-67 4a1o:A, 4a1o:B
5 3zzm:A 520 56 0.0441 0.0500 0.4643 8.23e-07 4a1o:A, 4a1o:B
6 7a3z:A 307 55 0.0339 0.0651 0.3636 0.84
7 3s1s:A 870 78 0.0441 0.0299 0.3333 0.93
8 1jl0:B 311 54 0.0322 0.0611 0.3519 2.3 3dz2:B, 3dz2:A, 3dz3:B, 3dz3:A, 3dz4:B, 3dz4:A, 3dz5:B, 3dz5:A, 3dz6:B, 3dz6:A, 3dz7:B, 3dz7:A, 3ep3:A, 3ep4:A, 3ep5:A, 3ep6:B, 3ep6:A, 3ep7:B, 3ep7:A, 3ep8:B, 3ep8:A, 3ep9:A, 3epa:A, 3epb:A, 3h0v:B, 3h0v:A, 3h0w:B, 3h0w:A, 1i72:B, 1i72:A, 1i79:B, 1i79:A, 1i7b:B, 1i7b:A, 1i7c:A, 1i7c:B, 1i7m:A, 1i7m:B, 1i7m:C, 1i7m:D, 1jl0:A
9 1kij:A 384 104 0.0407 0.0625 0.2308 2.6 6enh:A, 1kij:B
10 1yol:A 256 60 0.0356 0.0820 0.3500 5.3 7ah3:B, 6ate:A, 5d10:A, 5d10:B, 5d11:A, 5d11:B, 5d12:B, 7d57:B, 7d5o:B, 3el7:A, 3en5:A, 3en6:B, 3en7:A, 4fic:A, 4fic:B, 8haq:A, 8haq:B, 6hve:B, 6hvf:A, 6hvf:B, 2hwo:A, 2hwo:B, 2hwp:A, 2hwp:B, 8jf3:A, 8jf3:B, 4lgg:A, 4lgg:B, 4lgh:A, 4lgh:B, 3lok:A, 3lok:B, 2qlq:A, 2qlq:B, 3qlf:A, 2qq7:A, 2qq7:B, 3uqf:B, 6wiw:A, 4ybj:B, 1yol:B
11 7mvv:A 1542 83 0.0441 0.0169 0.3133 5.4 4knh:B, 7tbi:I1, 7tbi:I2, 7tbj:I1, 7tbj:I2, 7tbj:I3, 7tbj:I4, 7tbj:I5, 7tbk:I1, 7tbk:I2, 7tbk:I3, 7tbk:I4, 7tbk:I5, 7tbl:I1, 7tbl:I2, 7tbl:I3, 7tbl:I4, 7tbl:I5, 7tbm:I1, 7tbm:I2, 7tbm:I3, 7tbm:I4, 7tbm:I5
12 6k0w:B 499 72 0.0339 0.0401 0.2778 6.2
13 8apq:A 406 65 0.0356 0.0517 0.3231 7.6 8apq:B, 8apq:C, 8apq:D, 8apq:E, 8apq:F
14 6ynv:e 417 36 0.0220 0.0312 0.3611 7.9 6ynx:e, 6ynx:E, 6yny:e, 6yny:E, 6ynz:e, 6ynz:E, 6ynz:e3, 6ynz:E3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218