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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RQIRPYYNLPSKSEHGRKMTGFLTPYRHWMWKQNELWRNVHEAQFEHLRRVYKRQWLESFRVNADEYIYKYNITKAAQLA
QWECEMKEQEKKRIEARQMMDGRQALKKKHLDLLREFHERQFFFWYERASERLQNMNLINYVPHAQLREHIDKELDKYVA
GKNEPYPLNFVGQMPFLEDGDGNIVEVPESLLSNHMAEHPDSTAKPHEPHTSSSISEAAAFEERMLRAMVSAKEEDLKEW
LGDDSRALSETIDDISREEEEREADIRVARSMEETDAEREVSRRAYIERGK

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hiv:Cd 291 291 1.0000 1.0000 1.0000 0.0 6hiw:Cd, 6hiy:Cd, 7pua:Cd, 7pub:Cd, 6sga:Cd, 6sgb:Cd
2 7aor:q 214 214 0.6151 0.8364 0.8364 9.06e-141
3 7ane:q 196 195 0.5430 0.8061 0.8103 1.05e-121
4 6rxt:CI 822 128 0.1203 0.0426 0.2734 0.32 6rxu:CI, 6rxv:CI, 6rxx:CI, 6rxy:CI, 6rxz:CI
5 6rax:5 620 23 0.0378 0.0177 0.4783 3.5 6ray:5, 6raz:5
6 6raw:5 576 29 0.0412 0.0208 0.4138 3.9
7 7qxa:A 954 66 0.0515 0.0157 0.2273 6.5 7bg9:A, 7qxb:A, 7qxs:A, 7trd:A, 7tre:A, 7trf:A
8 7v99:A 991 66 0.0515 0.0151 0.2273 6.6 5ugw:A
9 5ah2:C 382 56 0.0550 0.0419 0.2857 6.8 5ah2:A, 5ah2:B, 5ah2:D, 5ah4:A, 5ah4:B
10 3lfz:A 280 50 0.0550 0.0571 0.3200 7.2 3kh5:A
11 5zi5:A 850 26 0.0378 0.0129 0.4231 7.4 5zi5:B, 5zi7:A, 5zi7:B, 5zie:A, 5zie:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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