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BioLiP
>protein
RQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNP

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2a06:G 73 73 1.0000 1.0000 1.0000 2.15e-50 1pp9:G, 1ppj:G
2 7o3e:R 72 72 0.8082 0.8194 0.8194 1.10e-40
3 3hmz:A 191 36 0.1918 0.0733 0.3889 0.41
4 4zm6:A 844 23 0.1370 0.0118 0.4348 0.51 4zm6:B
5 1mo4:A 324 30 0.1781 0.0401 0.4333 0.70 1g18:A, 1mo3:A, 1mo5:A, 1mo6:A
6 8cub:C 588 46 0.1781 0.0221 0.2826 2.6 8cub:A, 7r8a:A, 7r8b:A
7 5w7k:A 274 52 0.1644 0.0438 0.2308 4.2 5w7k:B
8 8pv1:CI 152 39 0.1644 0.0789 0.3077 5.1 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
9 6kjl:A 328 13 0.1096 0.0244 0.6154 7.1 2dcj:A, 2dcj:B, 2dck:A, 6kjl:B, 6kka:A, 6kka:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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