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BioLiP
>protein
RQDSKDRYQYKQYIYRSIGGIVPPEMAETVTANQTAQWEAGFTPYHKLRLAIKEICKTDGIPNIKWGMYIAFGEKLLKSY
LKMKAGSASSDMIAEYINNAISAFSSRTGISQETAQKIADFITSNY

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5w7g:B 126 126 1.0000 1.0000 1.0000 2.09e-92 5w7g:D, 5w7g:F, 5w7g:H, 5w7g:J, 5w7g:L, 5w7g:N, 5w7g:P, 5w7g:R, 5w7g:T, 5w7g:V, 5w7g:X, 5w7g:Z, 5w7g:b, 5w7g:d, 5w7g:f, 5w7g:h, 5w7g:j, 5w7g:l, 5w7g:n, 5w7g:p
2 5w7g:A 131 87 0.2698 0.2595 0.3908 3.09e-14 5w7g:C, 5w7g:E, 5w7g:G, 5w7g:I, 5w7g:K, 5w7g:M, 5w7g:O, 5w7g:Q, 5w7g:S, 5w7g:U, 5w7g:W, 5w7g:Y, 5w7g:a, 5w7g:c, 5w7g:e, 5w7g:g, 5w7g:i, 5w7g:k, 5w7g:m, 5w7g:o
3 6wq2:A 154 61 0.1349 0.1104 0.2787 0.004 6wq2:B, 6wq2:C, 6wq2:D, 6wq2:E, 6wq2:F, 6wq2:G, 6wq2:H, 6wq2:I, 6wq2:J, 6wq2:K, 6wq2:L, 6wq2:M, 6wq2:N, 6wq2:P, 6wq2:R, 6wq2:T
4 7txj:A 153 70 0.1190 0.0980 0.2143 0.13
5 3fed:A 690 59 0.1349 0.0246 0.2881 2.0 3fec:A, 3fee:A, 3ff3:A
6 6grh:C 266 37 0.1032 0.0489 0.3514 7.3 6gos:C, 6grg:C, 6gri:C
7 1wn1:A 356 40 0.1111 0.0393 0.3500 8.3 1wn1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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