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BioLiP
>protein
RPTVFRWTGGGKEVYLSGSFNNWSKLPLTRDQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKK
TDFEVFDALMVDSQKAPPILPPHLLQVILNKSCDPALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6c9h:B 168 164 0.9875 0.9405 0.9634 1.51e-115 6e4t:B, 6e4u:B, 6e4w:B, 5kq5:B, 4qfr:B, 4qfs:B, 5t5t:B, 5ufu:B
2 7myj:D 187 184 0.9875 0.8449 0.8587 6.80e-110 6b1u:B, 6b1u:D, 8bik:B, 8bik:E, 6c9f:B, 6c9g:B, 6c9j:B, 4cfe:B, 4cfe:D, 4cff:B, 4cff:D, 5ezv:B, 5ezv:D, 5iso:B, 5iso:D, 7myj:B, 4yef:A, 4yef:B, 4yef:C, 4yef:D, 4yef:E, 4yef:F, 4yef:G, 1z0m:A, 1z0m:B, 1z0m:C, 1z0n:A, 1z0n:B, 1z0n:C, 4zhx:B, 4zhx:D
3 6b2e:B 193 175 0.8562 0.7098 0.7829 2.08e-97 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
4 2qrd:D 92 57 0.1812 0.3152 0.5088 2.57e-12 2qr1:B, 2qr1:D, 2qrc:B, 2qrc:D, 2qrd:B
5 4pyh:A 293 128 0.2500 0.1365 0.3125 1.22e-08
6 8dl1:A 713 51 0.1125 0.0252 0.3529 0.035 8dge:A, 8dge:B, 8dge:C, 8dge:D, 8dl1:B, 8dl1:C, 8dl1:D, 8dl2:A, 8dl2:B, 8dl2:C, 8dl2:D
7 6m5r:B 689 70 0.1125 0.0261 0.2571 1.2 6m5s:B, 6m5u:B, 6m5v:B
8 7wao:A 502 63 0.1187 0.0378 0.3016 3.0 7waj:A, 7wak:A, 7wal:A
9 7ovi:A 262 25 0.0750 0.0458 0.4800 3.8 7ovk:A, 6yg5:A
10 2fc0:A 196 17 0.0625 0.0510 0.5882 5.6 2fbv:A, 2fbx:A
11 5z1e:A 296 25 0.0750 0.0405 0.4800 6.2 7cbx:A, 6ib0:A, 6ib2:A, 7ovj:A, 7ovl:A, 7ovm:A, 7ovn:A, 6qft:A, 6qg4:A, 6qg7:A, 6qho:A, 6qhr:A, 3wzu:A, 6yg2:A, 6yg3:A, 6yg4:A, 6yg6:A, 6yg6:B, 6yg7:A, 6yg7:B, 6yz4:A, 5z1d:A
12 8pk5:B 495 54 0.1125 0.0364 0.3333 6.6
13 2cdq:A 470 15 0.0625 0.0213 0.6667 8.2 2cdq:B
14 5avp:A 240 22 0.0625 0.0417 0.4545 8.3 5avp:B, 5avp:C, 5avp:D
15 7esn:A 435 31 0.0750 0.0276 0.3871 8.5 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
16 6xb3:A 234 57 0.0875 0.0598 0.2456 9.2 6xb3:B, 6xb3:C, 6xb3:D, 6xb3:E, 6xb3:F, 6xb3:G, 6xb3:H, 6xb3:I, 6xb3:J, 6xb3:K, 6xb3:L, 6xb3:M, 6xb3:N, 6xb3:O, 6xb3:P
17 7ucw:B 281 17 0.0625 0.0356 0.5882 9.7 7ucw:A, 7ucw:C, 7ucw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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