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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RPSSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQ
VVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI
NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVRH
RIPDGYIERHCLNL

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2iwa:A 254 254 1.0000 1.0000 1.0000 0.0 2faw:A, 2faw:B
2 3mbr:X 236 230 0.3819 0.4110 0.4217 1.60e-56
3 3nol:A 234 235 0.3780 0.4103 0.4085 3.11e-52 3nom:A, 3nom:B
4 3nok:A 234 231 0.3228 0.3504 0.3550 2.66e-39 3nok:B
5 8y85:A 514 33 0.0433 0.0214 0.3333 0.47 8y85:B, 8y86:A
6 6z1p:AR 274 37 0.0512 0.0474 0.3514 1.8
7 6hyp:A 2272 59 0.0630 0.0070 0.2712 6.2
8 5jcs:s 2003 59 0.0630 0.0080 0.2712 6.4
9 7uo3:A 174 34 0.0394 0.0575 0.2941 6.9 7uma:A, 7uo8:A
10 4yzf:A 475 31 0.0472 0.0253 0.3871 9.9 4yzf:B, 4yzf:C, 4yzf:D
11 8t45:A 460 31 0.0472 0.0261 0.3871 9.9 8t3r:A, 8t3u:A, 8t3u:B, 8t44:A, 8t45:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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