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BioLiP
>protein
RPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLK

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hod:A 61 58 1.0000 0.9508 1.0000 5.50e-38 5hod:D
2 8ik5:C 67 57 0.5690 0.4925 0.5789 2.86e-18 8ike:C, 8ilw:C
3 8osb:E 62 53 0.4655 0.4355 0.5094 2.06e-11
4 3a01:F 61 53 0.4483 0.4262 0.4906 3.18e-11 3a01:B, 3lnq:A
5 1fjl:A 65 53 0.4138 0.3692 0.4528 8.39e-11 1fjl:B, 1fjl:C
6 3cmy:A 60 53 0.4310 0.4167 0.4717 3.18e-10
7 8ejo:A 56 54 0.4138 0.4286 0.4444 7.69e-10 8ejo:B, 8ejp:A, 8ejp:B
8 6e8c:A 135 53 0.3966 0.1704 0.4340 2.25e-08 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
9 6e8c:A 135 50 0.3103 0.1333 0.3600 5.09e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
10 6m3d:C 108 56 0.3793 0.2037 0.3929 8.00e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
11 6m3d:C 108 51 0.3103 0.1667 0.3529 2.12e-05 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
12 1ig7:A 58 57 0.3966 0.3966 0.4035 3.07e-07
13 8g8e:X 140 56 0.3793 0.1571 0.3929 5.86e-07 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
14 3l1p:A 147 56 0.3793 0.1497 0.3929 8.13e-07 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
15 2lkx:A 68 53 0.3621 0.3088 0.3962 1.21e-06
16 4rdu:D 62 57 0.3276 0.3065 0.3333 2.53e-06 4rdu:A, 4xrs:I, 4xrs:G
17 5wc9:A 136 56 0.3621 0.1544 0.3750 3.76e-06 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
18 2ld5:A 67 57 0.3621 0.3134 0.3684 6.79e-06
19 1jgg:A 57 56 0.3621 0.3684 0.3750 1.25e-05 1jgg:B
20 8eml:A 58 56 0.3276 0.3276 0.3393 1.72e-05 8eml:B
21 2me6:A 71 58 0.3793 0.3099 0.3793 1.80e-05
22 9b8u:B 66 49 0.3276 0.2879 0.3878 2.28e-05 9b8u:A, 9b8u:C, 9b8u:D
23 5eea:G 63 48 0.3103 0.2857 0.3750 2.50e-05 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
24 8bx1:A 127 43 0.2931 0.1339 0.3953 3.15e-05
25 7xrc:C 134 54 0.3448 0.1493 0.3704 3.34e-05 2xsd:C
26 3d1n:I 150 49 0.2931 0.1133 0.3469 4.79e-05 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
27 6es3:K 72 27 0.2414 0.1944 0.5185 6.48e-05 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
28 1b72:A 68 54 0.3103 0.2647 0.3333 1.61e-04
29 3rkq:A 58 55 0.3276 0.3276 0.3455 5.40e-04 3rkq:B
30 1gt0:C 137 56 0.2931 0.1241 0.3036 7.99e-04 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
31 2h1k:B 60 56 0.3448 0.3333 0.3571 0.001 2h1k:A
32 4qtr:C 57 54 0.3103 0.3158 0.3333 0.002 4qtr:A, 4qtr:B, 4qtr:D
33 4egc:A 539 54 0.3276 0.0353 0.3519 0.003
34 4rbo:A 55 53 0.2759 0.2909 0.3019 0.004 4rbo:D
35 1zq3:P 68 60 0.3448 0.2941 0.3333 0.004
36 5flv:M 229 28 0.2586 0.0655 0.5357 0.007 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
37 1lfu:P 82 36 0.1897 0.1341 0.3056 0.008 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
38 2d5v:A 135 50 0.2586 0.1111 0.3000 0.008 2d5v:B, 8t0f:A, 8t11:A
39 5zjr:A 64 45 0.3103 0.2812 0.4000 0.016 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
40 2r5z:A 75 56 0.3103 0.2400 0.3214 0.016 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
41 1ahd:P 68 56 0.3103 0.2647 0.3214 0.026
42 4cyc:A 66 55 0.2931 0.2576 0.3091 0.030 1b8i:A
43 8pna:A 67 56 0.2931 0.2537 0.3036 0.033 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
44 4uus:A 67 54 0.2931 0.2537 0.3148 0.035 4uus:E
45 3a01:A 78 58 0.3793 0.2821 0.3793 0.051 3a01:E
46 1nk2:P 77 28 0.2414 0.1818 0.5000 0.13 1nk3:P
47 4xrm:B 64 30 0.2069 0.1875 0.4000 0.15 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
48 1puf:A 77 32 0.2241 0.1688 0.4062 0.25 2lp0:A
49 8izj:B 183 32 0.2586 0.0820 0.4688 1.3 8izj:A, 7y94:A, 7y94:B
50 6ryd:A 69 62 0.3276 0.2754 0.3065 2.0 6ryd:B, 6ryd:E, 6ryd:F, 6ryi:A, 6ryi:B, 6ryi:C, 6ryi:D, 6ryi:E, 6ryl:A, 6ryl:B, 6ryl:C, 6ryl:D, 6ryl:E
51 2z00:A 426 33 0.2069 0.0282 0.3636 2.4
52 1u10:C 241 34 0.2069 0.0498 0.3529 3.0 1u10:A, 1u10:B, 1u10:D, 1u10:E, 1u10:F
53 1le8:A 53 27 0.1552 0.1698 0.3333 5.7 1akh:A, 1yrn:A
54 6wig:A 84 54 0.2586 0.1786 0.2778 6.1 6wig:B
55 8b71:A 552 26 0.1724 0.0181 0.3846 7.3 8b71:B
56 6s3k:B 573 26 0.1724 0.0175 0.3846 7.3 8b70:A, 8b70:B, 6s3k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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