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BioLiP
>protein
RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m3d:C 108 57 0.9649 0.5093 0.9649 5.06e-33 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
2 6m3d:C 108 51 0.8421 0.4444 0.9412 7.05e-28 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
3 4qtr:C 57 55 0.6667 0.6667 0.6909 4.78e-18 4qtr:A, 4qtr:B, 4qtr:D
4 4rdu:D 62 56 0.5439 0.5000 0.5536 5.47e-17 4rdu:A, 4xrs:I, 4xrs:G
5 8eml:A 58 56 0.5439 0.5345 0.5536 7.97e-16 8eml:B
6 2me6:A 71 56 0.5263 0.4225 0.5357 6.90e-15
7 1ig7:A 58 56 0.4912 0.4828 0.5000 1.34e-14
8 1b72:A 68 54 0.4912 0.4118 0.5185 4.61e-14
9 2r5z:A 75 56 0.5263 0.4000 0.5357 5.23e-14 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
10 6es3:K 72 54 0.4561 0.3611 0.4815 1.75e-13 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
11 1jgg:A 57 56 0.4737 0.4737 0.4821 1.80e-13 1jgg:B
12 4cyc:A 66 54 0.4737 0.4091 0.5000 4.02e-13 1b8i:A
13 1zq3:P 68 51 0.4561 0.3824 0.5098 5.43e-13
14 4uus:A 67 54 0.4737 0.4030 0.5000 5.78e-13 4uus:E
15 1ahd:P 68 56 0.5088 0.4265 0.5179 7.46e-13
16 3rkq:A 58 55 0.4737 0.4655 0.4909 1.56e-12 3rkq:B
17 2h1k:B 60 56 0.4912 0.4667 0.5000 3.12e-12 2h1k:A
18 8pna:A 67 56 0.4211 0.3582 0.4286 1.05e-11 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
19 3a01:F 61 56 0.4386 0.4098 0.4464 3.68e-11 3a01:B, 3lnq:A
20 1puf:A 77 54 0.4386 0.3247 0.4630 1.53e-10 2lp0:A
21 3a01:A 78 53 0.3860 0.2821 0.4151 1.78e-10 3a01:E
22 5eea:G 63 54 0.4211 0.3810 0.4444 1.85e-10 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
23 1fjl:A 65 56 0.4211 0.3692 0.4286 2.11e-10 1fjl:B, 1fjl:C
24 2ld5:A 67 54 0.3860 0.3284 0.4074 4.41e-10
25 5hod:A 61 56 0.4211 0.3934 0.4286 5.89e-10 5hod:D
26 8osb:E 62 56 0.4211 0.3871 0.4286 8.37e-10
27 5flv:M 229 51 0.4386 0.1092 0.4902 9.39e-10 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
28 2lkx:A 68 56 0.4035 0.3382 0.4107 1.38e-09
29 1nk2:P 77 55 0.4035 0.2987 0.4182 2.47e-09 1nk3:P
30 4rbo:A 55 53 0.4211 0.4364 0.4528 2.85e-09 4rbo:D
31 3cmy:A 60 56 0.3860 0.3667 0.3929 7.31e-09
32 6e8c:A 135 51 0.4035 0.1704 0.4510 9.30e-09 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 49 0.2632 0.1111 0.3061 6.82e-04 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 5zjr:A 64 57 0.4211 0.3750 0.4211 2.72e-08 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
35 8ejo:A 56 53 0.3684 0.3750 0.3962 5.08e-08 8ejo:B, 8ejp:A, 8ejp:B
36 8ik5:C 67 56 0.3684 0.3134 0.3750 6.32e-08 8ike:C, 8ilw:C
37 9b8u:B 66 49 0.2632 0.2273 0.3061 5.39e-04 9b8u:A, 9b8u:C, 9b8u:D
38 1le8:A 53 53 0.2281 0.2453 0.2453 0.004 1akh:A, 1yrn:A
39 3d1n:I 150 55 0.2456 0.0933 0.2545 0.006 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
40 4egc:A 539 50 0.2632 0.0278 0.3000 0.009
41 1lfu:P 82 37 0.2281 0.1585 0.3514 0.010 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
42 1gt0:C 137 54 0.2632 0.1095 0.2778 0.15 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
43 4j19:A 77 69 0.2982 0.2208 0.2464 0.23 4j19:B
44 8g8e:X 140 57 0.2807 0.1143 0.2807 0.31 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
45 5wc9:A 136 49 0.2456 0.1029 0.2857 0.35 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
46 4g0k:A 327 38 0.2456 0.0428 0.3684 0.47 4g0k:B, 4g0l:A, 4g0l:B, 3r3e:A, 3r3e:B
47 3l1p:A 147 26 0.1579 0.0612 0.3462 1.0 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
48 8bx1:A 127 25 0.1579 0.0709 0.3600 1.5
49 2d5v:A 135 50 0.2632 0.1111 0.3000 1.6 2d5v:B, 8t0f:A, 8t11:A
50 1akh:B 78 34 0.2281 0.1667 0.3824 2.3 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
51 1mnm:C 77 34 0.2281 0.1688 0.3824 2.7 1mnm:D
52 8si6:A 1107 27 0.1754 0.0090 0.3704 3.0 8si2:A, 8si2:B, 8si2:D, 8si2:C, 8si3:A, 8si3:B, 8si3:C, 8si3:D, 8si4:A, 8si4:B, 8si4:C, 8si4:D, 8si5:A, 8si5:B, 8si5:D, 8si5:C, 8si6:B, 8si6:C, 8si6:D, 8si7:A, 8si7:B, 8si7:D, 8si7:C, 8si8:A, 8si8:B, 8si8:D, 8si8:C, 8sia:A, 8sia:D, 8sia:B, 8sia:C, 8w2l:A, 8w2l:B, 8w2l:C, 8w2l:D
53 8ui7:A 643 31 0.2281 0.0202 0.4194 3.8 8ui8:A, 8ui9:A, 8uii:A
54 1mwq:A 100 54 0.3158 0.1800 0.3333 4.0
55 7mq8:LH 746 33 0.2105 0.0161 0.3636 4.3 7mq9:LH, 7mqa:LH
56 8fip:A 338 23 0.1754 0.0296 0.4348 4.7 8fio:A, 8fio:B, 8fip:B
57 8fip:A 338 21 0.1754 0.0296 0.4762 7.4 8fio:A, 8fio:B, 8fip:B
58 5htv:A 424 17 0.1754 0.0236 0.5882 9.0 5htx:A
59 6m0r:A 750 42 0.1930 0.0147 0.2619 9.1 7tao:A
60 6fqp:A 67 38 0.2105 0.1791 0.3158 9.3 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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