Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RPRLGRLTEETIDIAREVLVEGKSQSDVARERGLSRQRVSSMVKSVVSAANEIPREWQRVEVWLPPNLAEKVRQMEADAK
ADVARKNQLTDAAL

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bcb:B 97 89 0.9468 0.9175 1.0000 7.31e-59 7bca:A, 7bca:B, 7bcb:A
2 8qa9:C 107 86 0.3830 0.3364 0.4186 1.24e-10 5clv:A, 5clv:B, 5clv:E, 5clv:F, 5clv:I, 5clv:J, 5clv:M, 5clv:N, 5cm3:A, 5cm3:B, 8qa9:D, 2w7n:A, 2w7n:B
3 7zc0:AAA 710 51 0.1809 0.0239 0.3333 0.26
4 5zcr:A 725 35 0.1489 0.0193 0.4000 0.45 5zcr:B
5 3cxm:A 242 47 0.1383 0.0537 0.2766 0.79
6 5odn:D 106 43 0.1596 0.1415 0.3488 3.5 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
7 8q4d:D 373 30 0.1277 0.0322 0.4000 4.6 8b4h:A, 8b4h:B, 8b4h:C, 8b4h:D, 8q4d:A, 8q4d:B, 8q4d:C
8 6hun:A 428 96 0.2766 0.0607 0.2708 7.8
9 5frp:A 677 25 0.0957 0.0133 0.3600 8.3 5frp:B, 5frs:A
10 8xha:A 401 19 0.0957 0.0224 0.4737 8.7 8i7u:C, 8i7u:F, 8i7u:A, 8i7u:E, 8i7u:B, 8i7u:D, 8xha:B, 8xhd:A, 8xhd:B, 8xhk:C, 8xhk:A, 8xhk:B, 8xhk:E, 8xhk:D, 8xhk:F
11 4zfv:A 436 49 0.1596 0.0344 0.3061 8.8 5bsb:A, 5bvc:A, 5tkr:A, 4yh5:A, 4yh5:B, 4zfv:B, 4zlu:A, 4zlu:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218