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BioLiP
>protein
RPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPE
AAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF
SIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKP

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fog:A 218 215 1.0000 0.9862 1.0000 9.64e-162 6fog:C, 6fog:G, 6fog:E, 6fog:F, 6fog:H, 6fog:D, 6fog:B, 6foh:A, 6foh:B, 1saw:A, 1saw:B
2 6sbi:A 216 214 0.8837 0.8796 0.8879 8.04e-146 6sbi:B, 6sbi:C, 6sbi:D, 6sbj:A, 6sbj:B, 6sbj:C, 6sbj:D
3 1nr9:A 211 201 0.4140 0.4218 0.4428 2.09e-52 1nr9:B, 1nr9:C, 1nr9:D
4 3v77:A 224 202 0.3767 0.3616 0.4010 6.69e-50 3v77:B, 3v77:C, 3v77:D, 3v77:E, 3v77:F
5 1nkq:A 247 242 0.4140 0.3603 0.3678 1.40e-46 1nkq:B, 1nkq:C, 1nkq:D, 1nkq:E, 1nkq:F
6 6j5y:A 233 207 0.3581 0.3305 0.3720 1.05e-43
7 3qdf:A 252 202 0.3581 0.3056 0.3812 5.21e-41
8 1gtt:A 421 178 0.3628 0.1853 0.4382 5.80e-41 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
9 1gtt:A 421 201 0.2279 0.1164 0.2438 4.57e-09 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
10 8sky:B 303 184 0.3674 0.2607 0.4293 6.97e-40 8sky:A, 8sut:A, 8sut:B, 8suu:A, 8suu:B
11 8gsr:A 290 211 0.3628 0.2690 0.3697 2.30e-38 8gsr:B, 8gsr:C, 8gsr:D, 8gst:A, 8gst:B, 8gst:C, 8gst:D
12 6iym:A 277 211 0.3581 0.2780 0.3649 2.84e-37 6iym:B
13 6jvw:B 264 206 0.3302 0.2689 0.3447 1.99e-32 6jvw:A
14 6j5x:A 280 183 0.3163 0.2429 0.3716 1.01e-30 6j5x:B
15 6v77:B 279 181 0.2930 0.2258 0.3481 7.57e-29 6v77:A
16 4dbh:A 269 200 0.3163 0.2528 0.3400 8.90e-27 4dbf:A, 4dbf:B, 4dbh:B
17 3r6o:A 265 219 0.3209 0.2604 0.3151 2.60e-22
18 8tdi:G 386 73 0.1023 0.0570 0.3014 4.8 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
19 6h0n:A 377 139 0.1674 0.0955 0.2590 9.8 6h0n:B, 6h0p:A, 6h0p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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