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BioLiP
>protein
RPKMTPEQMAKEMSEFLSRGPAVLATKAAAGTKKYDLSKWKYAELRDTINTSCDIELLAACREEFHRRLKVYHAWKSKNK
KR

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6e5n:B 82 82 1.0000 1.0000 1.0000 1.54e-57
2 8w41:A 1162 59 0.6341 0.0448 0.8814 2.38e-30 4dbr:A, 4e7s:A, 4e7s:B, 4e7z:A, 4e7z:B, 5o2l:A, 4pfo:A, 4pfp:A, 4pfp:C, 4pjl:A, 4pjm:A, 4pjn:A, 4pk4:A, 2v26:A
3 6jmb:A 374 30 0.1707 0.0374 0.4667 0.63
4 5vyz:C 1083 50 0.1829 0.0139 0.3000 4.7 5vyw:A, 5vyw:B, 5vyw:C, 5vz0:C
5 5vyz:A 1144 50 0.1829 0.0131 0.3000 4.7 5vyw:D, 5vyz:B, 5vyz:D, 5vz0:A, 5vz0:B, 5vz0:D, 7zyy:A, 7zyy:C, 7zyy:B, 7zyy:D, 7zyz:A, 7zz0:A, 7zz1:A, 7zz2:A, 7zz3:A, 7zz3:C, 7zz3:B, 7zz3:D, 7zz4:A, 7zz5:A, 7zz6:D, 7zz6:A, 7zz8:A, 7zz8:C, 7zz8:D, 7zz8:B
6 3zx1:A 471 37 0.1585 0.0276 0.3514 8.3
7 5xq3:A 901 74 0.2927 0.0266 0.3243 8.9 5xq3:B, 5xqg:A, 5xqg:B, 5xqg:C, 5xqg:D, 5xqg:E, 5xqg:F, 5xqg:G, 5xqg:H, 5xqj:A, 5xqj:B, 5xqj:C, 5xqj:D, 5xqj:E, 5xqj:F, 5xqj:G, 5xqj:H, 5xqo:A, 5xqo:B
8 8bpo:t2 418 29 0.1341 0.0263 0.3793 9.5
9 1qdb:A 473 40 0.1463 0.0254 0.3000 9.7 1qdb:B, 1qdb:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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