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BioLiP
>protein
RPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETKAKEATDLGKEAGFPLMFTT
EPEE

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yjx:C 84 84 1.0000 1.0000 1.0000 5.69e-58 4yjx:A, 4yjx:B, 4yjx:D, 4yka:A, 4yka:B, 4yka:C, 4yka:D
2 3gq1:A 85 83 0.3929 0.3882 0.3976 2.34e-17 3dnj:A, 3dnj:B, 3g19:A, 3g1b:A, 3g1b:B, 3g3p:B, 3gq1:B, 3gw1:A, 3gw1:B
3 3o2b:C 105 80 0.3690 0.2952 0.3875 3.44e-14 1mbx:D, 3o2b:A, 3o2h:A, 1r6o:D, 1r6q:D, 2w9r:A, 2wa8:A, 2wa8:C, 2wa9:A, 2wa9:B, 2wa9:C, 2wa9:D, 2wa9:E, 2wa9:F, 2wa9:G
4 7d34:A 79 80 0.3214 0.3418 0.3375 1.22e-08
5 8e9h:G 782 56 0.2262 0.0243 0.3393 0.44 8e9g:G, 8e9i:G
6 4en4:A 310 52 0.2024 0.0548 0.3269 0.51 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
7 3o0f:A 287 55 0.2024 0.0592 0.3091 0.73 3e0f:A
8 4awy:B 270 65 0.2619 0.0815 0.3385 0.86 4awz:A, 4awz:B, 4awz:C, 4ax0:B, 4ax1:B, 4p62:A
9 3b97:C 433 33 0.1548 0.0300 0.3939 6.2 3b97:A, 3b97:B, 3b97:D, 2psn:A, 2psn:B, 2psn:C, 2psn:D
10 7p59:A 360 35 0.1310 0.0306 0.3143 6.9 6elc:A, 7p5a:A, 7p5b:A, 7p5d:A
11 3enz:C 246 29 0.1071 0.0366 0.3103 7.5 6aqs:A, 2bsx:A, 3enz:A, 3enz:B, 3enz:D, 3enz:E, 3enz:F, 3fow:A, 3fow:B, 1nw4:A, 1nw4:B, 1nw4:C, 1nw4:D, 1nw4:E, 1nw4:F, 3phc:A, 3phc:B, 3phc:C, 3phc:D, 3phc:E, 3phc:F, 1q1g:A, 1q1g:B, 1q1g:C, 1q1g:D, 1q1g:E, 1q1g:F, 1sq6:A, 8w7h:A, 5znc:A, 5zni:A
12 6jci:A 704 53 0.1786 0.0213 0.2830 7.8
13 6o8w:4 44 22 0.1190 0.2273 0.4545 8.3 8a57:7, 8a5i:7, 8a63:7, 7nhk:6, 7nhn:7, 6o8x:4, 6o8y:4, 6o8z:4, 6o90:4, 7p7q:6, 7p7r:6, 7p7s:6, 7p7t:6, 7p7u:6, 8uu4:6, 8uu5:6, 8uu6:6, 8uu7:6, 8uu8:6, 8uu9:6, 8uua:6, 6w6p:4, 6wu9:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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