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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RPGIVAGCLSPHPPHLIYGENPPQNEPRSTGGWETLRWAYERLRARIRDVHKPDVLIVHAPHWITMVGHHVNCVPNPRGL
SVEPIFPHLFRYRYDFRTDVELGEAIAEEASGLGLVTRTLRDPRVRVDYATIGALHLANPAWDIPVVSLSANNNPYFYSD
ASLTEMEVLGEATRLAVEATGRRAVLLASNSLSHLHWHEEPELPEDMEREHPYNNHQYRWDMKLLEAIRRGPTAPLRDLI
PEHIEATASETKAGSLTWMLAAMGWPKVAGDVLGYGTIIGTGNAIVEWLPEG

The query sequence (length=292) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7txy:F 293 292 1.0000 0.9966 1.0000 0.0 7txy:B, 7txy:D, 7txy:H
2 3vsh:D 304 286 0.5719 0.5493 0.5839 2.01e-127 3vsh:B, 3vsi:B, 3vsi:D, 3vsj:B, 3vsj:D
3 8ihg:A 300 286 0.5719 0.5567 0.5839 2.02e-122 8ihg:C
4 5jc3:A 668 113 0.0822 0.0359 0.2124 0.26 5jc3:B, 5jc7:B, 5jcf:A, 5jcf:B, 5jch:A, 5jch:B
5 8f4v:A 264 47 0.0514 0.0568 0.3191 0.43 8f4v:E, 8f4v:B, 8f4v:C, 8f4v:D
6 1rrv:A 401 41 0.0514 0.0374 0.3659 5.6 1rrv:B
7 8ooc:J 448 30 0.0479 0.0312 0.4667 5.7 6fhs:J, 8oof:J, 8oor:J, 8oot:J
8 2ebf:X 711 60 0.0685 0.0281 0.3333 6.8 2ebh:X
9 5tqr:B 809 32 0.0377 0.0136 0.3438 9.1 5bjs:B, 5vk3:B
10 7lsy:Y 855 60 0.0548 0.0187 0.2667 9.8 6bkg:A, 4htp:A, 4htp:B, 3w1b:A, 3w1g:A, 3w5o:A, 3w5o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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