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BioLiP
>protein
RPDAEKRIAAVLESFDKISNPAAITPTASFAKDLNLDSLDTVEVVVAIEEEFGIEIPDKEADEIKSVNQAVEYILAQ

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b0n:T 81 77 1.0000 0.9506 1.0000 2.73e-49 6gcs:O, 7o6y:O, 6rfq:O, 6rfr:O, 6rfs:O, 6y79:O
2 7zmb:Q 85 72 0.6234 0.5647 0.6667 5.53e-29 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
3 7b0n:U 88 73 0.5974 0.5227 0.6301 2.45e-28 6rfq:Q, 6rfr:Q, 6y79:Q
4 8bee:U 87 71 0.4935 0.4368 0.5352 1.93e-22 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
5 8e73:AB 85 71 0.4805 0.4353 0.5211 4.80e-22
6 7ar7:T 84 71 0.5065 0.4643 0.5493 1.31e-21 7ar8:T, 8bq6:T
7 6sga:Fc 84 74 0.4416 0.4048 0.4595 1.72e-17 6sgb:Fc, 6yxy:EK
8 7ak6:U 88 68 0.4026 0.3523 0.4559 8.46e-16 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
9 8jfh:E 79 55 0.3896 0.3797 0.5455 1.43e-15 8jfn:B
10 8iuf:AB 88 77 0.3636 0.3182 0.3636 3.38e-15 8j9h:AB, 8j9i:AB, 8j9j:AB
11 2eht:A 77 51 0.3636 0.3636 0.5490 6.73e-15
12 2fac:A 77 51 0.3896 0.3896 0.5882 1.04e-14 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
13 2qnw:A 80 53 0.3766 0.3625 0.5472 1.78e-14
14 8iuf:AC 92 77 0.4026 0.3370 0.4026 7.91e-14 8j9h:AC, 8j9i:AC, 8j9j:AC
15 8ba0:U 85 68 0.3766 0.3412 0.4265 8.12e-14 8ba0:T, 8esz:AC
16 7arc:U 84 51 0.3117 0.2857 0.4706 1.37e-12 7ard:U
17 2x2b:A 76 58 0.3506 0.3553 0.4655 1.10e-10
18 3gzl:A 81 51 0.2987 0.2840 0.4510 3.55e-10 2fq0:A, 2fq2:A, 3gzm:B
19 2koo:A 81 47 0.3247 0.3086 0.5319 3.96e-10 2kop:A, 2koq:A, 2kor:A, 2kos:A
20 2fva:A 82 72 0.3506 0.3293 0.3750 1.59e-08
21 6lvu:A 78 55 0.2597 0.2564 0.3636 1.05e-06 6lvu:B
22 2ll8:A 101 34 0.1948 0.1485 0.4412 7.24e-04
23 5hv8:A 95 37 0.1688 0.1368 0.3514 0.079
24 8rdj:F 660 39 0.1948 0.0227 0.3846 0.18
25 4bph:A 85 27 0.1818 0.1647 0.5185 0.22
26 2k0x:A 86 43 0.1558 0.1395 0.2791 0.23 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
27 3dnt:A 415 40 0.1818 0.0337 0.3500 0.30 3tpt:A, 4yg7:K
28 4h2y:D 63 24 0.1429 0.1746 0.4583 0.35
29 4h2w:D 75 24 0.1429 0.1467 0.4583 0.67 4h2x:D
30 6kfu:A 527 71 0.2987 0.0436 0.3239 0.68 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
31 5kp8:B 78 54 0.1818 0.1795 0.2593 1.2
32 2z23:A 517 61 0.1688 0.0251 0.2131 1.2
33 4h6d:B 329 49 0.2078 0.0486 0.3265 1.2 4h67:B, 4h6d:A, 4h6d:E, 4h6d:H
34 7f2r:B 79 50 0.2208 0.2152 0.3400 1.6
35 2n5h:A 90 47 0.1688 0.1444 0.2766 3.3 2n5i:A, 6o6e:E
36 5z43:A 292 34 0.1688 0.0445 0.3824 5.7 5z43:B, 5z44:A, 5z44:B, 5z45:A, 5z45:B, 5z46:A, 5z46:B
37 3qy6:A 247 30 0.1429 0.0445 0.3667 6.7 3qy7:A
38 2lki:A 83 25 0.1429 0.1325 0.4400 8.6
39 8cg6:C 75 36 0.1558 0.1600 0.3333 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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