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BioLiP
>protein
RNVLKIRRRKMNHHKYRKLVKRTRFLRRKVREARLKRKQMKFERDLRRIWQKAGLKEAPPGWQTPKIYLKGK

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jd5:n 72 72 1.0000 1.0000 1.0000 6.44e-46 6neq:n, 6nf8:n
2 5aj3:n 72 72 0.8611 0.8611 0.8611 4.02e-40 5aj4:An, 6gaw:An, 6gaz:An, 7nqh:An, 7nql:An, 7nsi:An, 7nsj:An, 8oin:AD, 8oip:AD, 6ydp:An, 6ydw:An
3 7l08:A3 72 72 0.8611 0.8611 0.8611 1.64e-39 7a5f:d6, 7a5g:d6, 7a5i:d6, 7a5k:d6, 8any:A3, 8csq:3, 8csr:3, 8css:3, 8cst:3, 8csu:3, 3j9m:A3, 8k2a:Sn, 6nu2:A3, 6nu3:A3, 7og4:A3, 8oir:AD, 8ois:AD, 7p2e:3, 7pnx:3, 7pny:3, 7pnz:3, 7po0:3, 7po1:3, 7po2:3, 7po3:3, 7qi4:A3, 7qi5:A3, 7qi6:A3, 8qrk:3, 8qrl:3, 8qrm:3, 8qrn:3, 6rw4:3, 6rw5:3, 6vlz:A3, 6vmi:A3, 8xt0:Sn, 8xt2:Sn, 6zm5:A3, 6zm6:A3, 6zs9:A3, 6zsa:A3, 6zsb:A3, 6zsc:A3, 6zsd:A3, 6zse:A3, 6zsg:A3
4 7pnv:3 72 72 0.8611 0.8611 0.8611 9.71e-39 7pnt:3, 7pnu:3, 7pnw:3
5 8v46:A 412 38 0.1806 0.0316 0.3421 0.28 8ux9:B, 8ux9:C, 8v46:B, 8v47:A, 8v47:B, 8v47:C, 8v48:A, 8v48:B, 8v48:C, 8v48:F, 8v49:A, 8v49:B
6 6zj3:SW 125 30 0.1944 0.1120 0.4667 1.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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