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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQ
SHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVV
NFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDF
VIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAF
DELVREMVHADVELMRTNPNA

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5in4:A 355 350 1.0000 0.9606 0.9743 0.0 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
2 5uzh:A 345 344 0.6774 0.6696 0.6715 8.05e-168
3 7kf3:A 362 340 0.6158 0.5801 0.6176 1.70e-157 7kf3:B, 7kf3:C, 7kf3:D
4 1n7g:B 336 342 0.5660 0.5744 0.5643 3.58e-136 1n7g:A, 1n7g:C, 1n7g:D, 1n7h:A, 1n7h:B
5 2z1m:A 338 336 0.5572 0.5621 0.5655 8.00e-134 2z1m:D, 2z95:A, 2z95:D
6 1rpn:D 322 332 0.4692 0.4969 0.4819 4.67e-104 1rpn:A, 1rpn:B, 1rpn:C
7 2pk3:A 309 330 0.2845 0.3139 0.2939 1.83e-35 2pk3:B
8 7us5:A 346 348 0.2786 0.2746 0.2730 3.18e-32 7us5:B, 7us5:C, 7us5:D
9 2hun:A 329 330 0.2522 0.2614 0.2606 1.70e-17 2hun:B
10 7yst:A 312 170 0.1672 0.1827 0.3353 5.42e-17 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
11 4zrn:A 309 320 0.2405 0.2654 0.2562 6.67e-17 4zrm:A, 4zrm:B, 4zrn:B
12 1orr:A 338 357 0.2463 0.2485 0.2353 1.58e-15 1orr:B, 1orr:C, 1orr:D
13 6x3b:A 300 208 0.1672 0.1900 0.2740 1.84e-15 6x3b:B, 6x3b:C, 6x3b:D
14 8du1:A 361 337 0.2346 0.2216 0.2374 8.86e-14 8du1:B, 8du1:C, 8du1:D
15 6bwl:A 313 332 0.2493 0.2716 0.2560 1.09e-13
16 6bi4:C 311 332 0.2287 0.2508 0.2349 4.08e-13 6bi4:B, 6bi4:D, 6bi4:A
17 1rkx:C 351 342 0.2258 0.2194 0.2251 2.93e-12 1rkx:A, 1rkx:B, 1rkx:D
18 1bxk:B 344 343 0.2346 0.2326 0.2332 4.48e-12 1bxk:A
19 1keu:A 361 349 0.2346 0.2216 0.2292 5.23e-12 1g1a:A, 1g1a:B, 1g1a:C, 1g1a:D, 1keu:B, 1kew:A, 1kew:B
20 1wvg:A 352 348 0.2551 0.2472 0.2500 8.24e-12 1wvg:B
21 8wov:B 341 344 0.2405 0.2405 0.2384 3.18e-11 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
22 1a9y:A 338 345 0.2375 0.2396 0.2348 6.36e-11 1a9z:A, 5gy7:A, 5gy7:B, 1kvq:A, 1kvr:A, 1kvs:A, 1kvt:A, 1kvu:A, 1lrj:A, 1lrk:A, 1lrl:A, 1nah:A, 1nai:A, 1uda:A, 1udb:A, 1udc:A, 2udp:A, 2udp:B, 1xel:A
23 3aw9:A 304 332 0.2375 0.2664 0.2440 6.42e-11 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
24 2pzm:A 316 265 0.2111 0.2278 0.2717 1.53e-10 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
25 2p5u:A 311 256 0.2082 0.2283 0.2773 4.11e-10 2p5u:B, 2p5u:C, 2p5u:D, 2p5y:A
26 2b69:A 312 338 0.2346 0.2564 0.2367 4.29e-10 4gll:A, 4gll:B
27 8sk0:B 330 221 0.1701 0.1758 0.2624 1.21e-08 8shh:A, 8shh:B, 8sk0:A
28 3vps:A 303 266 0.1935 0.2178 0.2481 1.59e-08 3vps:B
29 7xpo:A 344 352 0.2375 0.2355 0.2301 1.77e-08 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
30 1ker:B 347 348 0.2287 0.2248 0.2241 2.20e-08 1kep:A, 1kep:B, 1ker:A, 1ket:A, 1ket:B, 1oc2:A, 1oc2:B
31 6wj9:B 308 249 0.1994 0.2208 0.2731 2.47e-08 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
32 1r66:A 322 339 0.2229 0.2360 0.2242 2.78e-08 1r6d:A
33 3ehe:A 290 241 0.1818 0.2138 0.2573 5.77e-08 3ehe:B
34 2c20:A 329 343 0.2522 0.2614 0.2507 1.34e-07 2c20:B, 2c20:C, 2c20:D, 2c20:E, 2c20:F
35 2q1w:A 300 79 0.0880 0.1000 0.3797 1.84e-07 2q1w:B, 2q1w:C
36 4twr:A 325 286 0.2170 0.2277 0.2587 2.29e-07 4wok:A
37 6dnt:A 310 339 0.2434 0.2677 0.2448 2.71e-07
38 6vlo:A 319 213 0.1554 0.1661 0.2488 7.11e-07 6vlo:B, 6vlo:C, 6vlo:D
39 6k0g:A 335 351 0.2463 0.2507 0.2393 2.05e-06 6k0h:A, 6k0i:A
40 4id9:B 328 157 0.1408 0.1463 0.3057 2.59e-05 4id9:A, 4idg:A, 4idg:B
41 6zll:A 321 202 0.1584 0.1682 0.2673 3.44e-05 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
42 1z45:A 674 167 0.1349 0.0682 0.2754 4.86e-05
43 6kv9:A 299 258 0.2053 0.2341 0.2713 1.51e-04 6kvc:A
44 7kn1:A 336 349 0.2199 0.2232 0.2149 1.56e-04 7kn1:B
45 1i3k:A 347 357 0.2141 0.2104 0.2045 2.10e-04 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B
46 3enk:A 340 303 0.2229 0.2235 0.2508 2.21e-04 3enk:B
47 1gy8:C 370 281 0.2023 0.1865 0.2456 3.30e-04 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
48 7k3p:A 329 338 0.2141 0.2219 0.2160 6.44e-04 7k3p:B
49 4lk3:B 274 341 0.2199 0.2737 0.2199 7.86e-04 4lk3:A, 4lk3:C, 4lk3:D, 4lk3:E, 4lk3:F, 4m55:A, 4m55:B, 4m55:C, 4m55:D
50 4lis:A 364 159 0.1378 0.1291 0.2956 0.001 4lis:B, 4lis:C
51 4r1s:A 319 70 0.0762 0.0815 0.3714 0.002 4r1s:B
52 6nbr:A 316 65 0.0645 0.0696 0.3385 0.026 6nbr:B, 6nbr:C, 6nbr:D
53 5k4w:C 321 188 0.1378 0.1464 0.2500 0.049 5k4q:A, 5k4q:B, 5k4q:C, 5k4q:D, 5k4q:E, 5k4q:F, 5k4u:A, 5k4u:C, 5k4v:A, 5k4v:C, 5k4w:A, 5k4y:A, 5k4y:B, 5k4y:C, 5k4y:D, 5k4y:E, 5k4y:F, 5k50:A, 5k50:C, 5k50:E, 5k50:G, 5k50:I, 5k50:J, 5lc1:A, 5lc1:B, 5lc1:C, 5lc1:D, 5lc1:E, 5lc1:F
54 3c1t:B 326 44 0.0499 0.0521 0.3864 0.069 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
55 5tqm:A 315 66 0.0587 0.0635 0.3030 0.098 5tqm:B
56 1vl0:A 281 163 0.1202 0.1459 0.2515 0.14 1vl0:B, 1vl0:C
57 2xgt:B 433 64 0.0469 0.0370 0.2500 0.23 2xgt:A, 2xti:A, 2xti:B
58 5zji:3 221 98 0.0792 0.1222 0.2755 0.28
59 3lu1:A 336 339 0.2170 0.2202 0.2183 0.31 3lu1:B, 3lu1:C, 3lu1:D, 3ru7:A, 3ru7:B, 3ru7:C, 3ru7:D, 3ru9:A, 3ru9:B, 3ru9:C, 3ru9:D, 3rua:A, 3rua:B, 3rua:C, 3rua:D, 3ruc:A, 3ruc:B, 3ruc:C, 3ruc:D, 3rud:A, 3rud:B, 3rud:C, 3rud:D, 3rue:A, 3rue:B, 3rue:S, 3rue:b, 3ruf:A, 3ruf:B, 3ruf:S, 3ruf:b, 3ruh:A, 3ruh:B, 3ruh:C, 3ruh:D
60 1y1p:A 342 37 0.0440 0.0439 0.4054 0.47 1y1p:B
61 1sb8:A 341 243 0.1672 0.1672 0.2346 0.47 1sb9:A
62 8fet:A 334 54 0.0616 0.0629 0.3889 0.83 8fet:B, 8feu:A, 8feu:B, 8fev:A, 8fev:B, 8few:A, 8few:B
63 3ojc:A 230 81 0.0616 0.0913 0.2593 0.88 3ojc:B
64 6vo6:D 311 24 0.0469 0.0514 0.6667 0.94 6vo6:A, 6vo6:B, 6vo6:C, 6vo8:A, 6vo8:B
65 5f5n:A 289 65 0.0587 0.0692 0.3077 1.0 5f5n:B
66 8r2j:B 275 77 0.0557 0.0691 0.2468 1.0 8r2j:A
67 7cgv:A 310 217 0.1408 0.1548 0.2212 1.3 7cgv:B, 7cgv:C, 7cgv:D
68 2ggs:A 273 79 0.0733 0.0916 0.3165 1.3 2ggs:B
69 1x92:B 197 63 0.0528 0.0914 0.2857 1.5 1x92:A
70 4m55:E 164 127 0.1056 0.2195 0.2835 1.9
71 5u9c:A 288 153 0.1144 0.1354 0.2549 2.0 5u9c:C
72 8fem:A 327 49 0.0469 0.0489 0.3265 2.1 8fen:A
73 5dcy:A 366 39 0.0469 0.0437 0.4103 2.5 5cob:A, 5cob:B, 5cob:C, 5cob:D, 5dbf:A, 5dbf:B, 5dbg:A, 5dbg:B, 5dbi:A, 5dbi:B, 5dcu:A, 5dcu:B, 5dcy:B, 5df1:A, 5df1:B, 5emh:A
74 1i24:A 392 68 0.0557 0.0485 0.2794 3.4 1i2b:A, 1i2c:A, 1qrr:A
75 8htu:3 222 90 0.0674 0.1036 0.2556 3.6 8htu:7, 7ksq:3, 7kux:3, 6l35:3, 7xqp:3, 7xqp:7
76 8fip:A 338 30 0.0440 0.0444 0.5000 5.0 8fio:A, 8fio:B, 8fip:B
77 3lw7:B 170 99 0.0733 0.1471 0.2525 5.3
78 6gsd:A 364 38 0.0469 0.0440 0.4211 6.0 5mlh:A, 5mlm:A, 5mlr:A
79 5l3z:A 280 73 0.0645 0.0786 0.3014 6.3 5l4l:A
80 1kc1:A 298 100 0.0645 0.0738 0.2200 7.2 1kc3:A, 1n2s:A
81 2v6g:A 364 39 0.0469 0.0440 0.4103 7.8
82 8rth:F 542 63 0.0587 0.0369 0.3175 7.9 8rth:B, 8rth:D, 8rth:L, 8rth:H, 8rth:J
83 7w61:A 249 61 0.0557 0.0763 0.3115 8.4
84 8gjb:A 320 344 0.2023 0.2156 0.2006 8.7 8gjb:B
85 2ici:A 227 64 0.0528 0.0793 0.2812 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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