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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP
TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTDELYGKVQEIPQKETTPFYPRSPYGAA
KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLM
LQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQK
LNWKPRVAFDELVREMVHADVELMRTNPNA

The query sequence (length=350) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5in4:A 355 350 0.9971 0.9831 0.9971 0.0 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
2 5uzh:A 345 346 0.6657 0.6754 0.6734 1.03e-168
3 7kf3:A 362 342 0.6057 0.5856 0.6199 1.02e-158 7kf3:B, 7kf3:C, 7kf3:D
4 1n7g:B 336 347 0.5486 0.5714 0.5533 4.96e-135 1n7g:A, 1n7g:C, 1n7g:D, 1n7h:A, 1n7h:B
5 2z1m:A 338 342 0.5457 0.5651 0.5585 1.08e-133 2z1m:D, 2z95:A, 2z95:D
6 1rpn:D 322 338 0.4629 0.5031 0.4793 3.43e-105 1rpn:A, 1rpn:B, 1rpn:C
7 2pk3:A 309 339 0.2771 0.3139 0.2861 5.42e-33 2pk3:B
8 7us5:A 346 352 0.2714 0.2746 0.2699 4.48e-31 7us5:B, 7us5:C, 7us5:D
9 2hun:A 329 336 0.2514 0.2675 0.2619 7.41e-19 2hun:B
10 7yst:A 312 177 0.1686 0.1891 0.3333 8.37e-17 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
11 4zrn:A 309 328 0.2314 0.2621 0.2470 1.02e-15 4zrm:A, 4zrm:B, 4zrn:B
12 6x3b:A 300 208 0.1629 0.1900 0.2740 2.92e-15 6x3b:B, 6x3b:C, 6x3b:D
13 1orr:A 338 366 0.2429 0.2515 0.2322 4.16e-14 1orr:B, 1orr:C, 1orr:D
14 6bi4:C 311 335 0.2343 0.2637 0.2448 8.08e-14 6bi4:B, 6bi4:D, 6bi4:A
15 8du1:A 361 349 0.2371 0.2299 0.2378 1.41e-13 8du1:B, 8du1:C, 8du1:D
16 1bxk:B 344 348 0.2429 0.2471 0.2443 7.21e-13 1bxk:A
17 1rkx:C 351 347 0.2200 0.2194 0.2219 9.98e-13 1rkx:A, 1rkx:B, 1rkx:D
18 1keu:A 361 352 0.2314 0.2244 0.2301 2.03e-12 1g1a:A, 1g1a:B, 1g1a:C, 1g1a:D, 1keu:B, 1kew:A, 1kew:B
19 6bwl:A 313 338 0.2429 0.2716 0.2515 1.36e-11
20 1wvg:A 352 357 0.2514 0.2500 0.2465 1.59e-11 1wvg:B
21 8wov:B 341 349 0.2457 0.2522 0.2464 6.35e-11 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
22 1a9y:A 338 352 0.2343 0.2426 0.2330 2.39e-10 1a9z:A, 5gy7:A, 5gy7:B, 1kvq:A, 1kvr:A, 1kvs:A, 1kvt:A, 1kvu:A, 1lrj:A, 1lrk:A, 1lrl:A, 1nah:A, 1nai:A, 1uda:A, 1udb:A, 1udc:A, 2udp:A, 2udp:B, 1xel:A
23 3aw9:A 304 339 0.2314 0.2664 0.2389 4.30e-10 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
24 2p5u:A 311 264 0.2057 0.2315 0.2727 1.03e-09 2p5u:B, 2p5u:C, 2p5u:D, 2p5y:A
25 2pzm:A 316 271 0.2114 0.2342 0.2731 1.37e-09 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
26 8sk0:B 330 221 0.1686 0.1788 0.2670 1.81e-09 8shh:A, 8shh:B, 8sk0:A
27 1r66:A 322 345 0.2286 0.2484 0.2319 4.95e-09 1r6d:A
28 1ker:B 347 353 0.2257 0.2277 0.2238 5.34e-09 1kep:A, 1kep:B, 1ker:A, 1ket:A, 1ket:B, 1oc2:A, 1oc2:B
29 7xpo:A 344 356 0.2343 0.2384 0.2303 8.23e-09 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
30 2b69:A 312 346 0.2314 0.2596 0.2341 1.66e-08 4gll:A, 4gll:B
31 2q1w:A 300 85 0.0886 0.1033 0.3647 5.68e-08 2q1w:B, 2q1w:C
32 6wj9:B 308 254 0.1943 0.2208 0.2677 7.14e-08 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
33 3vps:A 303 278 0.1914 0.2211 0.2410 1.34e-07 3vps:B
34 6vlo:A 319 210 0.1571 0.1724 0.2619 1.36e-07 6vlo:B, 6vlo:C, 6vlo:D
35 3ehe:A 290 241 0.1743 0.2103 0.2531 1.96e-07 3ehe:B
36 6dnt:A 310 343 0.2400 0.2710 0.2449 3.58e-07
37 2c20:A 329 351 0.2486 0.2644 0.2479 4.31e-07 2c20:B, 2c20:C, 2c20:D, 2c20:E, 2c20:F
38 6k0g:A 335 358 0.2429 0.2537 0.2374 3.46e-06 6k0h:A, 6k0i:A
39 4twr:A 325 234 0.1743 0.1877 0.2607 1.04e-05 4wok:A
40 1z45:A 674 174 0.1343 0.0697 0.2701 3.02e-04
41 6zll:A 321 208 0.1571 0.1713 0.2644 3.42e-04 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
42 4id9:B 328 166 0.1371 0.1463 0.2892 4.54e-04 4id9:A, 4idg:A, 4idg:B
43 5k4w:C 321 196 0.1429 0.1558 0.2551 5.53e-04 5k4q:A, 5k4q:B, 5k4q:C, 5k4q:D, 5k4q:E, 5k4q:F, 5k4u:A, 5k4u:C, 5k4v:A, 5k4v:C, 5k4w:A, 5k4y:A, 5k4y:B, 5k4y:C, 5k4y:D, 5k4y:E, 5k4y:F, 5k50:A, 5k50:C, 5k50:E, 5k50:G, 5k50:I, 5k50:J, 5lc1:A, 5lc1:B, 5lc1:C, 5lc1:D, 5lc1:E, 5lc1:F
44 3c1t:B 326 62 0.0686 0.0736 0.3871 8.19e-04 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
45 1gy8:C 370 281 0.1971 0.1865 0.2456 8.66e-04 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
46 7kn1:A 336 355 0.2114 0.2202 0.2085 8.99e-04 7kn1:B
47 3enk:A 340 310 0.2200 0.2265 0.2484 0.001 3enk:B
48 1i3k:A 347 357 0.2057 0.2075 0.2017 0.002 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B
49 7k3p:A 329 241 0.1600 0.1702 0.2324 0.002 7k3p:B
50 6kv9:A 299 267 0.1971 0.2308 0.2584 0.003 6kvc:A
51 4r1s:A 319 75 0.0714 0.0784 0.3333 0.012 4r1s:B
52 4lk3:B 274 347 0.2114 0.2701 0.2133 0.013 4lk3:A, 4lk3:C, 4lk3:D, 4lk3:E, 4lk3:F, 4m55:A, 4m55:B, 4m55:C, 4m55:D
53 1vl0:A 281 113 0.0857 0.1068 0.2655 0.035 1vl0:B, 1vl0:C
54 5tqm:A 315 41 0.0457 0.0508 0.3902 0.14 5tqm:B
55 6nbr:A 316 71 0.0686 0.0759 0.3380 0.15 6nbr:B, 6nbr:C, 6nbr:D
56 5zji:3 221 98 0.0771 0.1222 0.2755 0.31
57 4lis:A 364 166 0.1400 0.1346 0.2952 0.38 4lis:B, 4lis:C
58 2xgt:B 433 64 0.0457 0.0370 0.2500 0.39 2xgt:A, 2xti:A, 2xti:B
59 8r2j:B 275 86 0.0657 0.0836 0.2674 0.40 8r2j:A
60 3lu1:A 336 339 0.2114 0.2202 0.2183 0.43 3lu1:B, 3lu1:C, 3lu1:D, 3ru7:A, 3ru7:B, 3ru7:C, 3ru7:D, 3ru9:A, 3ru9:B, 3ru9:C, 3ru9:D, 3rua:A, 3rua:B, 3rua:C, 3rua:D, 3ruc:A, 3ruc:B, 3ruc:C, 3ruc:D, 3rud:A, 3rud:B, 3rud:C, 3rud:D, 3rue:A, 3rue:B, 3rue:S, 3rue:b, 3ruf:A, 3ruf:B, 3ruf:S, 3ruf:b, 3ruh:A, 3ruh:B, 3ruh:C, 3ruh:D
61 1y1p:A 342 37 0.0429 0.0439 0.4054 0.48 1y1p:B
62 8fem:A 327 129 0.0943 0.1009 0.2558 0.76 8fen:A
63 6vo6:D 311 24 0.0457 0.0514 0.6667 0.92 6vo6:A, 6vo6:B, 6vo6:C, 6vo8:A, 6vo8:B
64 8fet:A 334 30 0.0457 0.0479 0.5333 0.96 8fet:B, 8feu:A, 8feu:B, 8fev:A, 8fev:B, 8few:A, 8few:B
65 3ojc:A 230 81 0.0600 0.0913 0.2593 0.98 3ojc:B
66 1kc1:A 298 100 0.0657 0.0772 0.2300 1.2 1kc3:A, 1n2s:A
67 1sb8:A 341 243 0.1629 0.1672 0.2346 1.2 1sb9:A
68 8gjb:A 320 351 0.2000 0.2188 0.1994 1.6 8gjb:B
69 1i24:A 392 134 0.1057 0.0944 0.2761 1.8 1i2b:A, 1i2c:A, 1qrr:A
70 5dcy:A 366 39 0.0457 0.0437 0.4103 2.6 5cob:A, 5cob:B, 5cob:C, 5cob:D, 5dbf:A, 5dbf:B, 5dbg:A, 5dbg:B, 5dbi:A, 5dbi:B, 5dcu:A, 5dcu:B, 5dcy:B, 5df1:A, 5df1:B, 5emh:A
71 8htu:3 222 90 0.0657 0.1036 0.2556 4.1 8htu:7, 7ksq:3, 7kux:3, 6l35:3, 7xqp:3, 7xqp:7
72 2fbh:A 137 45 0.0429 0.1095 0.3333 4.5
73 7p24:AAA 494 69 0.0514 0.0364 0.2609 4.5
74 7c1e:A 342 51 0.0486 0.0497 0.3333 4.6 7c1e:B, 7c3v:A, 5z2x:A, 5z2x:B, 8zav:A, 8zav:B, 5zec:A, 5zec:B, 5zed:A, 5zed:B
75 3kbf:A 156 100 0.0800 0.1795 0.2800 4.6
76 8fip:A 338 30 0.0429 0.0444 0.5000 4.9 8fio:A, 8fio:B, 8fip:B
77 6gsd:A 364 38 0.0457 0.0440 0.4211 5.9 5mlh:A, 5mlm:A, 5mlr:A
78 2v6g:A 364 39 0.0457 0.0440 0.4103 7.4
79 8rth:F 542 63 0.0571 0.0369 0.3175 8.5 8rth:B, 8rth:D, 8rth:L, 8rth:H, 8rth:J
80 2ggs:A 273 88 0.0771 0.0989 0.3068 8.7 2ggs:B
81 5l3z:A 280 29 0.0400 0.0500 0.4828 8.8 5l4l:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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