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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPHIEGNMKLHYGDLTDSTCLVKIINEVKPTE
IYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTDELYGKVQEIPQKETTPFYPRSPYGAAKL
YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQ
NDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLN
WKPRVAFDELVREMVHADVELMRTNPNA

The query sequence (length=348) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5in4:A 355 350 0.9971 0.9775 0.9914 0.0 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
2 5uzh:A 345 344 0.6695 0.6754 0.6773 1.52e-170
3 7kf3:A 362 340 0.6092 0.5856 0.6235 1.04e-160 7kf3:B, 7kf3:C, 7kf3:D
4 1n7g:B 336 345 0.5517 0.5714 0.5565 2.36e-135 1n7g:A, 1n7g:C, 1n7g:D, 1n7h:A, 1n7h:B
5 2z1m:A 338 340 0.5489 0.5651 0.5618 5.16e-134 2z1m:D, 2z95:A, 2z95:D
6 1rpn:D 322 336 0.4655 0.5031 0.4821 1.43e-105 1rpn:A, 1rpn:B, 1rpn:C
7 2pk3:A 309 337 0.2787 0.3139 0.2878 1.84e-33 2pk3:B
8 7us5:A 346 350 0.2730 0.2746 0.2714 3.26e-32 7us5:B, 7us5:C, 7us5:D
9 2hun:A 329 334 0.2529 0.2675 0.2635 6.82e-19 2hun:B
10 7yst:A 312 176 0.1667 0.1859 0.3295 5.35e-16 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
11 4zrn:A 309 326 0.2328 0.2621 0.2485 6.84e-16 4zrm:A, 4zrm:B, 4zrn:B
12 6x3b:A 300 208 0.1638 0.1900 0.2740 2.37e-15 6x3b:B, 6x3b:C, 6x3b:D
13 1orr:A 338 364 0.2443 0.2515 0.2335 2.16e-14 1orr:B, 1orr:C, 1orr:D
14 8du1:A 361 345 0.2356 0.2271 0.2377 4.95e-14 8du1:B, 8du1:C, 8du1:D
15 1rkx:C 351 345 0.2184 0.2165 0.2203 9.63e-14 1rkx:A, 1rkx:B, 1rkx:D
16 6bi4:C 311 333 0.2299 0.2572 0.2402 1.52e-13 6bi4:B, 6bi4:D, 6bi4:A
17 1bxk:B 344 346 0.2414 0.2442 0.2428 1.17e-12 1bxk:A
18 1wvg:A 352 351 0.2443 0.2415 0.2422 1.20e-12 1wvg:B
19 1keu:A 361 350 0.2328 0.2244 0.2314 3.44e-12 1g1a:A, 1g1a:B, 1g1a:C, 1g1a:D, 1keu:B, 1kew:A, 1kew:B
20 6bwl:A 313 336 0.2385 0.2652 0.2470 5.04e-12
21 8wov:B 341 345 0.2385 0.2434 0.2406 2.37e-11 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
22 2pzm:A 316 269 0.2126 0.2342 0.2751 1.30e-10 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
23 3aw9:A 304 337 0.2328 0.2664 0.2404 2.06e-10 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
24 2p5u:A 311 262 0.2069 0.2315 0.2748 5.62e-10 2p5u:B, 2p5u:C, 2p5u:D, 2p5y:A
25 1a9y:A 338 351 0.2385 0.2456 0.2365 9.51e-10 1a9z:A, 5gy7:A, 5gy7:B, 1kvq:A, 1kvr:A, 1kvs:A, 1kvt:A, 1kvu:A, 1lrj:A, 1lrk:A, 1lrl:A, 1nah:A, 1nai:A, 1uda:A, 1udb:A, 1udc:A, 2udp:A, 2udp:B, 1xel:A
26 8sk0:B 330 221 0.1695 0.1788 0.2670 1.92e-09 8shh:A, 8shh:B, 8sk0:A
27 2b69:A 312 347 0.2328 0.2596 0.2334 2.96e-09 4gll:A, 4gll:B
28 1r66:A 322 343 0.2299 0.2484 0.2332 4.47e-09 1r6d:A
29 6wj9:B 308 252 0.1983 0.2240 0.2738 6.46e-09 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
30 7xpo:A 344 354 0.2356 0.2384 0.2316 8.89e-09 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
31 1ker:B 347 354 0.2270 0.2277 0.2232 1.45e-08 1kep:A, 1kep:B, 1ker:A, 1ket:A, 1ket:B, 1oc2:A, 1oc2:B
32 2q1w:A 300 83 0.0891 0.1033 0.3735 3.34e-08 2q1w:B, 2q1w:C
33 6dnt:A 310 341 0.2443 0.2742 0.2493 7.26e-08
34 6vlo:A 319 213 0.1552 0.1693 0.2535 1.22e-07 6vlo:B, 6vlo:C, 6vlo:D
35 3vps:A 303 270 0.1897 0.2178 0.2444 1.49e-07 3vps:B
36 3ehe:A 290 241 0.1753 0.2103 0.2531 1.68e-07 3ehe:B
37 2c20:A 329 349 0.2529 0.2675 0.2521 5.90e-07 2c20:B, 2c20:C, 2c20:D, 2c20:E, 2c20:F
38 4twr:A 325 293 0.2155 0.2308 0.2560 1.42e-06 4wok:A
39 6k0g:A 335 356 0.2443 0.2537 0.2388 1.67e-06 6k0h:A, 6k0i:A
40 1z45:A 674 172 0.1351 0.0697 0.2733 1.62e-04
41 3c1t:B 326 60 0.0661 0.0706 0.3833 1.83e-04 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
42 3enk:A 340 307 0.2241 0.2294 0.2541 2.41e-04 3enk:B
43 6zll:A 321 206 0.1523 0.1651 0.2573 2.43e-04 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
44 4id9:B 328 164 0.1379 0.1463 0.2927 2.63e-04 4id9:A, 4idg:A, 4idg:B
45 7kn1:A 336 351 0.2155 0.2232 0.2137 5.27e-04 7kn1:B
46 1gy8:C 370 281 0.1983 0.1865 0.2456 0.001 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
47 1i3k:A 347 357 0.2126 0.2133 0.2073 0.001 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B
48 6kv9:A 299 265 0.1983 0.2308 0.2604 0.002 6kvc:A
49 7k3p:A 329 241 0.1609 0.1702 0.2324 0.002 7k3p:B
50 4lk3:B 274 345 0.2155 0.2737 0.2174 0.004 4lk3:A, 4lk3:C, 4lk3:D, 4lk3:E, 4lk3:F, 4m55:A, 4m55:B, 4m55:C, 4m55:D
51 4r1s:A 319 73 0.0747 0.0815 0.3562 0.005 4r1s:B
52 1vl0:A 281 113 0.0862 0.1068 0.2655 0.033 1vl0:B, 1vl0:C
53 5k4w:C 321 194 0.1351 0.1464 0.2423 0.038 5k4q:A, 5k4q:B, 5k4q:C, 5k4q:D, 5k4q:E, 5k4q:F, 5k4u:A, 5k4u:C, 5k4v:A, 5k4v:C, 5k4w:A, 5k4y:A, 5k4y:B, 5k4y:C, 5k4y:D, 5k4y:E, 5k4y:F, 5k50:A, 5k50:C, 5k50:E, 5k50:G, 5k50:I, 5k50:J, 5lc1:A, 5lc1:B, 5lc1:C, 5lc1:D, 5lc1:E, 5lc1:F
54 6nbr:A 316 69 0.0661 0.0728 0.3333 0.046 6nbr:B, 6nbr:C, 6nbr:D
55 8fem:A 327 127 0.0920 0.0979 0.2520 0.094 8fen:A
56 5tqm:A 315 41 0.0460 0.0508 0.3902 0.13 5tqm:B
57 4lis:A 364 163 0.1379 0.1319 0.2945 0.15 4lis:B, 4lis:C
58 8fet:A 334 61 0.0690 0.0719 0.3934 0.24 8fet:B, 8feu:A, 8feu:B, 8fev:A, 8fev:B, 8few:A, 8few:B
59 5zji:3 221 98 0.0776 0.1222 0.2755 0.32
60 2xgt:B 433 64 0.0460 0.0370 0.2500 0.38 2xgt:A, 2xti:A, 2xti:B
61 8fip:A 338 61 0.0661 0.0680 0.3770 0.41 8fio:A, 8fio:B, 8fip:B
62 1y1p:A 342 37 0.0431 0.0439 0.4054 0.49 1y1p:B
63 2ggs:A 273 86 0.0776 0.0989 0.3140 0.81 2ggs:B
64 3ojc:A 230 81 0.0603 0.0913 0.2593 0.91 3ojc:B
65 6vo6:D 311 24 0.0460 0.0514 0.6667 0.94 6vo6:A, 6vo6:B, 6vo6:C, 6vo8:A, 6vo8:B
66 1kc1:A 298 100 0.0661 0.0772 0.2300 1.1 1kc3:A, 1n2s:A
67 1sb8:A 341 243 0.1609 0.1642 0.2305 1.8 1sb9:A
68 8gjb:A 320 349 0.1954 0.2125 0.1948 2.1 8gjb:B
69 3lu1:A 336 275 0.1552 0.1607 0.1964 2.1 3lu1:B, 3lu1:C, 3lu1:D, 3ru7:A, 3ru7:B, 3ru7:C, 3ru7:D, 3ru9:A, 3ru9:B, 3ru9:C, 3ru9:D, 3rua:A, 3rua:B, 3rua:C, 3rua:D, 3ruc:A, 3ruc:B, 3ruc:C, 3ruc:D, 3rud:A, 3rud:B, 3rud:C, 3rud:D, 3rue:A, 3rue:B, 3rue:S, 3rue:b, 3ruf:A, 3ruf:B, 3ruf:S, 3ruf:b, 3ruh:A, 3ruh:B, 3ruh:C, 3ruh:D
70 5dcy:A 366 39 0.0460 0.0437 0.4103 2.6 5cob:A, 5cob:B, 5cob:C, 5cob:D, 5dbf:A, 5dbf:B, 5dbg:A, 5dbg:B, 5dbi:A, 5dbi:B, 5dcu:A, 5dcu:B, 5dcy:B, 5df1:A, 5df1:B, 5emh:A
71 7c1e:A 342 48 0.0460 0.0468 0.3333 2.7 7c1e:B, 7c3v:A, 5z2x:A, 5z2x:B, 8zav:A, 8zav:B, 5zec:A, 5zec:B, 5zed:A, 5zed:B
72 1i24:A 392 68 0.0546 0.0485 0.2794 3.4 1i2b:A, 1i2c:A, 1qrr:A
73 4l4x:A 503 77 0.0575 0.0398 0.2597 3.5
74 8htu:3 222 90 0.0661 0.1036 0.2556 3.8 8htu:7, 7ksq:3, 7kux:3, 6l35:3, 7xqp:3, 7xqp:7
75 5l3z:A 280 80 0.0603 0.0750 0.2625 5.3 5l4l:A
76 6gsd:A 364 38 0.0460 0.0440 0.4211 5.9 5mlh:A, 5mlm:A, 5mlr:A
77 8r2j:B 275 84 0.0603 0.0764 0.2500 6.6 8r2j:A
78 2v6g:A 364 39 0.0460 0.0440 0.4103 7.4
79 8rth:F 542 63 0.0575 0.0369 0.3175 8.5 8rth:B, 8rth:D, 8rth:L, 8rth:H, 8rth:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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