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BioLiP
>protein
RNSAKDIRTEERARVQLGNVVTAAALHGGIRISDQTTNSVETVVGKGESRVLIGNEYGGKGFWDNHHHHHH

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2lbu:B 71 71 1.0000 1.0000 1.0000 3.38e-47 2lbu:C, 2lbu:D, 2mus:B, 2mus:C, 2mus:D
2 4gxq:A 506 29 0.1690 0.0237 0.4138 2.2 4fut:A, 4gxq:B, 4gxq:C, 4gxr:A
3 5y6p:l4 172 25 0.1408 0.0581 0.4000 5.1 5y6p:g4, 5y6p:c4, 5y6p:e4, 5y6p:h4, 5y6p:j4, 5y6p:e5, 5y6p:l5, 5y6p:g5, 5y6p:c5, 5y6p:h5, 5y6p:j5, 5y6p:W8, 5y6p:Y8, 5y6p:f9, 5y6p:l9, 5y6p:h9, 5y6p:j9, 5y6p:ab, 5y6p:ad, 5y6p:af, 5y6p:al, 5y6p:ah, 5y6p:aj, 5y6p:bb, 5y6p:bf, 5y6p:bd, 5y6p:bh, 5y6p:bj, 5y6p:bl, 5y6p:cf, 5y6p:cb, 5y6p:cd, 5y6p:ch, 5y6p:cj, 5y6p:cl
4 8c9e:A 921 26 0.1408 0.0109 0.3846 6.2 8c9f:A, 8c9g:A, 8c9g:B
5 5vb0:C 143 38 0.1972 0.0979 0.3684 9.0 5vb0:A, 5vb0:B, 5vb0:D, 5vb0:E, 5vb0:F, 5vb0:G, 5vb0:H, 5wep:A, 5wep:B
6 4hlu:A 265 48 0.1831 0.0491 0.2708 9.0 4hlu:B, 4zir:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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