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BioLiP
>protein
RNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARL
RLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLASQILAFCEG
MLSRFVRSEFKYRPTDDFDARWPLIAAQLQ

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gcl:B 196 190 0.9947 0.9643 0.9947 6.06e-137 4gck:A, 4gck:B, 4gck:C, 4gck:D, 4gcl:A, 4gcl:C, 4gcl:D, 4gcl:E, 4gcl:G, 4gcl:H, 4gcl:F, 5hbu:A, 5hbu:B, 5hbu:C, 5hbu:D, 5hbu:E, 5hbu:G, 5hbu:H, 5hbu:F, 5hsz:A, 5k58:E, 5k58:F, 5k58:A, 5k58:B
2 4gct:C 190 189 0.6737 0.6737 0.6772 1.49e-92 4gct:A, 4gct:B, 4gct:D, 5haw:A, 5haw:B
3 5dy0:A 220 73 0.1421 0.1227 0.3699 2.56e-06 5dy0:B, 5dy0:C, 5dy0:D, 5dy1:A, 5dy1:B, 6gy3:A, 6gy3:B
4 4w97:A 196 80 0.1316 0.1276 0.3125 0.001
5 6o6n:A 195 84 0.1211 0.1179 0.2738 0.001 6o6p:A, 6o6p:B
6 7ju3:B 203 56 0.1053 0.0985 0.3571 0.002 8fw0:A, 8fw0:B, 8fw0:C, 8fw0:D, 8fw3:C, 8fw3:D, 8fw3:A, 8fw3:B, 8fw8:B, 8fw8:C, 8fw8:D, 7jnp:A, 7jnp:B, 7ju3:A, 8ssh:C, 8ssh:D, 8ssh:A, 8ssh:B
7 7xaq:B 201 51 0.0947 0.0896 0.3529 0.004 8hjb:A, 7xaq:D, 7xaq:H, 7xaq:A, 7xaq:G, 7xaq:C
8 2vpr:A 197 55 0.1053 0.1015 0.3636 0.004
9 2zoz:B 181 66 0.1000 0.1050 0.2879 0.005 2yve:A, 2yve:B, 2yvh:A, 2yvh:D, 2yvh:B, 2yvh:C, 2zoz:A
10 6g8g:A 195 54 0.1053 0.1026 0.3704 0.006 6g8g:B, 6g8g:C, 6g8g:D, 6g8h:CCC, 6g8h:BBB
11 5fmp:A 184 142 0.2158 0.2228 0.2887 0.006 5aqc:A, 5aqc:B, 5cw8:A, 5cw8:B, 5cxi:A, 5cxi:B, 5fmp:B, 5ua1:B, 5ua1:A, 5ua2:A
12 7k1c:B 208 67 0.0947 0.0865 0.2687 0.034 7k1a:A, 7k1a:B, 7k1c:A, 7kd8:A, 7kd8:B, 7kd8:D, 7kd8:C, 2uxh:A, 2uxh:B, 2uxi:A, 2uxi:B, 2uxo:B, 2uxp:A, 2uxp:B, 2uxu:A, 2uxu:B
13 8oo2:A 177 62 0.0947 0.1017 0.2903 0.039 8oo2:B
14 7eqf:A 184 46 0.0947 0.0978 0.3913 0.049 7eqf:B, 7eqf:C, 7eqf:D
15 6yl2:B 192 106 0.1474 0.1458 0.2642 0.080 6yl2:A
16 3qbm:A 199 92 0.1053 0.1005 0.2174 0.087 3qbm:B
17 6rxb:B 200 45 0.1000 0.0950 0.4222 0.096 6rxb:D, 6rxb:A, 6rxb:C
18 4aux:A 207 54 0.1000 0.0918 0.3519 0.11 4abz:AAA, 4b1r:A, 4b3a:A, 4d7m:A, 4d7n:A, 2fj1:A, 3fk7:A, 3fk7:B, 5fkk:A, 5fkk:B, 5fkl:A, 5fkm:A, 5fkn:A, 5fkn:B, 5fko:A, 6fpl:A, 6fpm:A, 2o7o:A, 1ork:A, 6qjw:A, 6qjx:A, 1qpi:A, 6rbl:A, 6rbm:A, 6rcr:A, 6rgx:B, 2tct:A, 2trt:A, 4v2g:A, 4v2g:B, 2vke:A, 2vkv:A, 2x6o:A, 2x9d:A, 2xb5:A, 2xpu:A, 2xpv:A, 2xpw:A, 2xrl:A, 6yr1:AAA, 6yr2:AAA, 6yr2:BBB
19 3zqf:A 183 49 0.1000 0.1038 0.3878 0.13 6sy4:B, 6sy6:B
20 2y31:A 242 105 0.1368 0.1074 0.2476 0.15 2y30:A, 2y30:B, 2y31:B, 3zql:A, 3zql:B, 3zql:C, 3zql:D
21 3p9t:A 213 67 0.0842 0.0751 0.2388 0.17
22 3zqg:A 208 49 0.1000 0.0913 0.3878 0.19 4ac0:A, 2ns8:A, 2ns8:B, 2ns8:C, 2ns8:D, 6sy4:A, 6sy6:A, 3zqh:A, 3zqi:A, 3zqi:B
23 6ko7:C 186 79 0.1105 0.1129 0.2658 0.20 6ie8:A, 6ie9:A, 6ko7:A, 6ko7:B, 6ko7:D, 6ko9:A, 6ko9:B, 6ko9:C, 6ko9:D, 7n4w:A, 7n4z:A, 7n4z:C, 7n4z:B, 7n4z:D, 7n53:A, 7n53:B, 7n54:A, 7n54:B, 7n54:C, 7n54:D, 3vvy:A, 3vvy:B, 3vvy:C, 3vvy:D, 3vvz:A, 3vvz:B, 3vvz:C, 3vvz:D, 3vw0:B, 3vw0:D, 3vw1:B, 3vw1:D, 3vw2:A, 3vw2:B, 3vw2:C, 3vw2:D
24 6srn:A 187 53 0.0842 0.0856 0.3019 0.21
25 4gl8:A 500 34 0.0737 0.0280 0.4118 0.27 4gl8:B
26 5gpc:A 190 73 0.0789 0.0789 0.2055 0.40 5gpc:B, 5gpc:C, 5gpc:D
27 5h58:B 204 38 0.0632 0.0588 0.3158 1.1 5h58:A, 5h58:C, 5h58:D, 4pxi:A, 4pxi:B, 4pxi:C, 4pxi:D
28 6frk:r 195 72 0.1105 0.1077 0.2917 1.2 5m72:A, 5wrv:B
29 3whc:A 190 68 0.0789 0.0789 0.2206 1.9 1vi0:A, 1vi0:B, 3whb:A, 3whb:B, 3whc:B, 3whc:C, 3whc:D, 3whc:E, 3whc:F
30 7odx:A 350 74 0.1316 0.0714 0.3378 2.3
31 6ayh:A 192 100 0.1158 0.1146 0.2200 2.3
32 8ppt:B 1191 53 0.0895 0.0143 0.3208 3.2 8ppu:B, 8ppv:B, 6t8h:B
33 2boy:A 253 37 0.0632 0.0474 0.3243 3.4 2boy:B, 2boy:C, 2boy:D, 2boy:E, 2boy:F, 2boy:G, 2boy:H
34 6ayi:A 183 65 0.1000 0.1038 0.2923 3.9 6ayi:B, 6ayi:C, 6ayi:D
35 2eh3:A 171 150 0.1842 0.2047 0.2333 4.0
36 9eut:A 728 90 0.1526 0.0398 0.3222 4.5 3c2w:A, 3c2w:B, 3c2w:C, 3c2w:D, 3c2w:E, 3c2w:F, 3c2w:G, 3c2w:H, 9eut:B, 9euy:A, 9euy:B, 3g6o:A, 3g6o:B, 3ibr:A, 3ibr:B, 3nhq:A, 3nhq:B, 3nhq:C, 3nhq:D, 3nhq:E, 3nhq:F, 3nhq:G, 3nhq:H, 3nop:C, 3not:C, 3nou:C
37 5vl9:C 191 45 0.0737 0.0733 0.3111 5.7 5vl9:B, 5vl9:A, 5vl9:D, 5vlg:A, 5vlg:B, 5vlg:C, 5vlg:D, 5vlg:E, 5vlg:F, 5vlg:G, 5vlg:H, 5vlm:A, 5vlm:B, 5vlm:C, 5vlm:D, 5vlm:E, 5vlm:F, 5vlm:G, 5vlm:H
38 8e29:A 692 23 0.0579 0.0159 0.4783 5.9 8e28:A, 8e2a:A, 4pmw:A, 4pmw:B
39 5mru:A 173 45 0.1000 0.1098 0.4222 6.4
40 6knb:B 1120 47 0.0737 0.0125 0.2979 6.5 6knc:B
41 5w1a:A 786 104 0.1421 0.0344 0.2596 7.9 8exw:A, 5w1a:C
42 2np5:A 187 53 0.0737 0.0749 0.2642 8.9
43 4v6w:Ca 149 29 0.0526 0.0671 0.3448 8.9 6xu6:Ca, 6xu7:Ca, 6xu8:Ca
44 3lsj:A 205 70 0.0632 0.0585 0.1714 9.7 3lsj:B, 3lsp:A, 3lsr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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