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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RNPVGGARVHFSNPEDAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAM
PALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMT
RCIQCTRCVRFASEVAGVQDLGILGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKATETIDVS
DAVGSNIRVDSRGPEVMRIIPRLNEDINEEWISDKTRFCYDGLKRQRLSDPMIRDSDGRFKAVSWRDALAVVGDIIHQVK
PDEIVGVAGQLSDAESMMVLKDFVNRMGSDNVWCEGTAAGVDADLRYSYLMNTSISGLENADLFLLIGTQPRVEAAMVNA
RICKTVRASNAKVGYVGPPAEFNYDCKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESI
AQANNVVRPDWNGLNFLLQYAAQAAALDLGLIQQSAKALESAKFVYLMGADDVNVDKIPKDAFVVYQGHHGDKAVYRANV
ILPASAFTEKEGTYENTEGFTQQTVPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPA
AFGPSLKPECKEAMSTTPFQTVVENFYMTNSITRASKIMAQCSAVLLK

The query sequence (length=688) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7a23:C 693 686 0.9971 0.9899 1.0000 0.0 7a24:C, 7aqr:G, 7ar7:G, 7ar8:G, 7arb:G, 8bed:G, 8bpx:G, 8bq5:G, 8bq6:G
2 6x89:S1 688 687 0.8212 0.8212 0.8224 0.0 8e73:S1
3 7arc:G 682 680 0.5741 0.5792 0.5809 0.0 7ard:G
4 7qso:G 700 680 0.5480 0.5386 0.5544 0.0 7ak5:G, 7ak6:G, 7b93:G, 8c2s:G, 8ca3:G, 8ca4:G, 8ca5:G, 7dgq:A, 7dgr:A, 7dgs:A, 7dgz:A, 7dh0:A, 7dkf:A2, 6g2j:G, 6g72:G, 5gpn:Y, 5gup:G, 8iao:G, 8iap:G, 8ib4:G, 8ib5:G, 8ib9:G, 8iba:G, 8ibd:G, 8ibe:G, 8ic2:G, 8ic3:G, 5lnk:3, 5o31:G, 8olt:G, 8om1:G, 7psa:G, 8pw5:3, 8pw6:3, 8pw7:3, 8q0a:G, 8q0f:G, 8q0j:G, 8q0m:G, 8q0o:G, 8q0q:G, 8q1p:G, 8q1u:G, 8q1y:G, 8q25:G, 8q45:G, 8q46:G, 8q47:G, 8q48:G, 8q49:G, 8q4a:G, 6q9d:S1, 6qa9:S1, 6qbx:S1, 6qc2:S1, 6qc3:S1, 6qc4:S1, 6qc5:S1, 6qc6:S1, 6qc7:S1, 6qc8:S1, 6qc9:S1, 6qca:S1, 6qcf:S1, 7qsd:G, 7qsk:G, 7qsl:G, 7qsm:G, 7qsn:G, 7r41:G, 7r42:G, 7r43:G, 7r44:G, 7r45:G, 7r46:G, 7r47:G, 7r48:G, 7r4c:G, 7r4d:G, 7r4f:G, 7r4g:G, 8rgp:3, 8rgq:3, 8rgr:3, 8rgt:3, 8ud1:1G, 8ueo:1G, 8uep:1G, 8ueq:1G, 8uer:1G, 8ues:1G, 8uet:1G, 8ueu:1G, 8uev:1G, 8uew:1G, 8uex:1G, 8uey:1G, 8uez:1G, 8ugh:1G, 8ugi:1G, 8ugj:1G, 8ugn:1G, 8ugn:5G, 8ugr:1G, 8ugr:5G, 7v2c:M, 7v2d:M, 7v2e:M, 7v2f:M, 7v2h:M, 7v2k:M, 7v2r:M, 7v30:M, 7v31:M, 7v32:M, 7v33:M, 7v3m:M, 7vb7:M, 7vbn:M, 7vbz:M, 7vwj:M, 7vxp:M, 7vxu:M, 7vy8:M, 7vya:M, 7vyf:M, 7vyh:M, 7vyn:M, 7vz1:M, 7vzv:M, 7vzw:M, 7w00:M, 7w0h:M, 7w0r:M, 7w0y:M, 7w1o:M, 7w1p:M, 7w1t:M, 7w1u:M, 7w1v:M, 7w1z:M, 7w20:M, 7w2k:M, 7w2l:M, 7w2r:M, 7w2u:M, 7w2y:M, 7w31:M, 7w32:M, 7w35:M, 7w4c:M, 7w4d:M, 7w4e:M, 7w4f:M, 7w4g:M, 7w4j:M, 7w4k:M, 7w4l:M, 7w4m:M, 7w4n:M, 7w4q:M, 5xtb:M, 5xtd:M, 5xth:M, 5xti:M, 5xti:BM, 7zd6:3, 7zdh:3, 7zdj:3, 7zdm:3, 7zdp:3, 7zeb:3, 6zk9:3, 6zkc:3, 6zkd:3, 6zke:3, 6zkf:3, 6zkg:3, 6zkh:3, 6zki:3, 6zkj:3, 6zkk:3, 6zkl:3, 6zkm:3, 6zkn:3, 6zko:3, 6zkp:3, 6zkq:3, 6zkr:3, 6zks:3, 6zkt:3, 6zku:3, 6zkv:3, 6zr2:G, 6ztq:G
5 7zm7:A 711 685 0.5233 0.5063 0.5255 0.0 7zmb:A, 7zmg:A
6 7b0n:G 694 686 0.5145 0.5101 0.5160 0.0 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
7 8esz:S1 683 686 0.5174 0.5212 0.5190 0.0 8b9z:G, 8ba0:G, 8esw:S1
8 8gym:s1 689 676 0.5015 0.5007 0.5104 0.0 8b6f:AB, 8bqs:AB, 8gym:S1, 8gzu:s1, 8gzu:S1, 7tgh:S1
9 8qby:G 666 681 0.4419 0.4565 0.4464 0.0
10 5lc5:G 685 201 0.2180 0.2190 0.7463 4.19e-101 5ldw:G, 5ldx:G
11 8e9h:G 782 422 0.2253 0.1982 0.3673 2.66e-72 8e9g:G, 8e9i:G
12 4hea:3 756 660 0.2791 0.2540 0.2909 2.46e-71 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
13 7awt:G 907 404 0.1860 0.1411 0.3168 2.27e-56 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
14 8iuf:1A 352 294 0.1526 0.2983 0.3571 5.79e-49 8j9h:1A, 8j9i:1A, 8j9j:1A
15 7q5y:A 626 285 0.1468 0.1613 0.3544 8.18e-45 7q5y:G, 7q5y:M, 7q5y:S
16 6tg9:A 949 429 0.1802 0.1307 0.2890 9.01e-41 6tg9:E, 6tga:A, 6tga:E
17 6tg9:A 949 119 0.0451 0.0327 0.2605 0.016 6tg9:E, 6tga:A, 6tga:E
18 7t30:A 666 648 0.2297 0.2372 0.2438 9.73e-38 7t2r:A, 7t2r:F, 7t30:F
19 7p8n:a 642 205 0.1047 0.1121 0.3512 8.14e-30 7p5h:A, 7p5h:D, 7p5h:a, 7p5h:d, 7p8n:A, 7p91:a, 7p91:A, 7p92:A
20 6h8k:A 628 126 0.0930 0.1019 0.5079 2.54e-28
21 8a6t:A 571 202 0.1076 0.1296 0.3663 5.54e-28 8a6t:D, 8bew:A, 8bew:D
22 8a5e:A 583 202 0.0945 0.1115 0.3218 9.59e-26 8a5e:D, 7q4v:A, 7q4v:E, 7q4w:A, 7q4w:E
23 5xf9:B 234 253 0.1134 0.3333 0.3083 1.57e-22 5xf9:F, 5xfa:B, 5xfa:F
24 7vw6:A 913 432 0.1453 0.1095 0.2315 6.05e-17 7e5z:A, 8j83:A, 7xqw:A
25 7vw6:A 913 101 0.0509 0.0383 0.3465 1.40e-08 7e5z:A, 8j83:A, 7xqw:A
26 8oh5:C 1172 561 0.1919 0.1126 0.2353 4.65e-16 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
27 8oh5:C 1172 101 0.0581 0.0341 0.3960 7.20e-14 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
28 4xdd:A 582 215 0.0727 0.0859 0.2326 2.48e-07 8aio:A, 8aio:B, 8aj6:A, 8aj6:B, 8aln:A, 8aln:B, 8ap2:A, 8ap2:B, 5byq:A, 5byq:B, 5byr:A, 5byr:B, 5bys:A, 5bys:B, 1c4a:A, 1c4c:A, 3c8y:A, 8cjy:A, 8cjy:B, 1feh:A, 6gly:A, 6gly:B, 6glz:A, 6glz:B, 6gm0:A, 6gm0:B, 6gm1:A, 6gm1:B, 6gm2:A, 6gm2:B, 6gm3:A, 6gm3:B, 6gm4:A, 6gm4:B, 6gm8:A, 6gm8:B, 6h63:A, 6h63:B, 5la3:A, 5la3:B, 6n59:A, 6n6p:A, 6nac:A, 5oef:A, 5oef:B, 8pvm:A, 8pvm:B, 7qhf:A, 7qhf:B, 8qm3:A, 8qm3:B, 4xdc:A, 4xdc:B, 4xdd:B, 6yf4:A, 6yf4:B
29 7qv7:S 571 73 0.0363 0.0438 0.3425 3.23e-07 7qv7:Y
30 7qv7:S 571 37 0.0174 0.0210 0.3243 5.3 7qv7:Y
31 1fdi:A 715 114 0.0422 0.0406 0.2544 2.26e-05 1aa6:A, 1fdo:A, 2iv2:X, 7z0t:A
32 7bkb:D 549 154 0.0567 0.0710 0.2532 0.002 7bkb:d, 7bkc:D, 7bkc:d, 7bkd:D, 7bke:D
33 7bkb:D 549 192 0.0698 0.0874 0.2500 0.052 7bkb:d, 7bkc:D, 7bkc:d, 7bkd:D, 7bke:D
34 2nya:A 791 81 0.0334 0.0291 0.2840 0.048 2nya:F
35 1frr:A 95 44 0.0262 0.1895 0.4091 0.063 1frr:B
36 3ml1:A 799 45 0.0276 0.0238 0.4222 0.065 3o5a:A
37 1ogy:A 789 45 0.0262 0.0228 0.4000 0.18 1ogy:C, 1ogy:E, 1ogy:G, 1ogy:I, 1ogy:K, 1ogy:M, 1ogy:O
38 7dn3:B 1044 51 0.0276 0.0182 0.3725 0.39 7du2:B
39 1dwl:A 59 60 0.0276 0.3220 0.3167 0.52
40 6zj3:SV 125 139 0.0480 0.2640 0.2374 2.6
41 8hfr:zp 88 43 0.0203 0.1591 0.3256 2.8 7bt6:z, 7btb:z, 6elz:z, 6em1:z, 6em5:z, 6ft6:z, 3jct:z, 6m62:z, 6n8j:z, 6n8k:z, 6n8l:z, 7nac:z, 7oh3:z, 7ohq:z, 7r7a:z, 7u0h:z, 7uoo:z, 7uqb:z, 7uqz:z, 7v08:z, 8v87:z, 6ylx:z, 6yly:z, 7z34:z
42 4zho:A 97 57 0.0291 0.2062 0.3509 2.8 4zho:B
43 5chc:A 895 56 0.0218 0.0168 0.2679 3.9 5ch7:A, 5ch7:C, 5ch7:E, 5chc:C, 5chc:E, 5e7o:A, 5e7o:C, 5e7o:E, 5e7o:G, 5e7o:I, 5e7o:K, 4ydd:A, 4ydd:C, 4ydd:E
44 5dwn:A 181 49 0.0189 0.0718 0.2653 6.2 5dwn:B, 5dwn:C, 5dwn:D
45 3wyw:B 214 54 0.0233 0.0748 0.2963 6.6 3wyw:A
46 3bqr:A 275 90 0.0305 0.0764 0.2333 6.9 5a6n:A, 3bhy:A, 2j90:A, 2j90:B, 5vja:A, 5vja:B, 5vja:C, 5vja:D
47 6cz7:A 814 76 0.0320 0.0270 0.2895 7.6 6cz7:C, 6cz8:C, 6cz8:A, 6cz9:A, 6cz9:C, 6cza:A, 6cza:C
48 1awd:A 94 43 0.0218 0.1596 0.3488 8.6
49 1rfk:B 97 38 0.0203 0.1443 0.3684 9.2 3p63:A, 3p63:B, 1rfk:A
50 8iuf:V1 504 91 0.0334 0.0456 0.2527 9.6 8j9h:V1, 8j9i:V1, 8j9j:V1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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