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BioLiP
>protein
RNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDKAELDRTEEYALGVVGVLESYIGSINNITKQS
ACVAMSKLLTELNSDDIKKLRDNEELNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIKNTLDIHKSITIN

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3b:C 178 171 1.0000 0.8989 0.9357 4.33e-115 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
2 6pzq:A 157 160 0.9625 0.9809 0.9625 4.89e-111 6pzq:C
3 4cs7:C 172 161 0.3688 0.3430 0.3665 1.10e-35 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
4 6xr0:M 683 44 0.0938 0.0220 0.3409 0.93
5 2cqe:A 98 22 0.0688 0.1122 0.5000 0.97
6 8dmf:A 718 45 0.0750 0.0167 0.2667 2.5 7uvp:A
7 2zba:D 391 49 0.1000 0.0409 0.3265 3.0
8 2zba:A 435 49 0.1000 0.0368 0.3265 3.1 2zba:B, 2zba:C
9 7yb9:A 430 114 0.1750 0.0651 0.2456 3.2 7bmi:A, 7bmj:A, 7bmj:C, 7e6j:A, 5jqy:A, 5jtc:A, 5jz6:A, 5jz8:A, 5jza:A, 5jzu:A, 6q9f:A, 6q9i:A, 6rk9:A, 6rk9:B, 7yb8:A, 7yba:A, 7ybb:A, 7ybc:A, 6yyu:A, 6yyv:A, 6yyw:A, 6yyx:A, 6yyy:A, 6z6q:A, 6z6r:A
10 5gp4:A 441 33 0.0625 0.0227 0.3030 4.3 5gp4:C, 5gp4:B
11 3kak:B 437 43 0.1062 0.0389 0.3953 4.3
12 3kal:A 470 43 0.1062 0.0362 0.3953 4.7 3kak:A, 3kal:B
13 8ro0:O 342 36 0.0875 0.0409 0.3889 6.1 8ro1:O
14 6pwy:B 513 38 0.0875 0.0273 0.3684 6.5 6pwy:A, 6pwy:D, 6pwy:C
15 2d9n:A 77 21 0.0625 0.1299 0.4762 8.6 2rhk:C
16 4ii1:B 139 21 0.0563 0.0647 0.4286 8.7 4ii1:A, 4ii1:C, 4ii1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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