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BioLiP
>protein
RNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDIDGAAELDRTEEYALGVVGVLESYIGSINNIT
KQSACVAMSKLLTELNSDDIKKLRDNEELNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIKNTLDIHKSI
TIN

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3b:C 178 171 0.9939 0.9101 0.9474 3.92e-117 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
2 6pzq:A 157 163 0.9448 0.9809 0.9448 1.59e-110 6pzq:C
3 4cs7:C 172 161 0.3742 0.3547 0.3789 2.18e-37 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
4 8ro0:O 342 109 0.1718 0.0819 0.2569 0.81 8ro1:O
5 2cqe:A 98 59 0.1104 0.1837 0.3051 1.1
6 5ixm:A 543 31 0.0675 0.0203 0.3548 2.9 5ixm:C, 5ixm:E, 5ixm:G
7 2zba:A 435 49 0.0982 0.0368 0.3265 3.1 2zba:B, 2zba:C
8 2zba:D 391 49 0.0982 0.0409 0.3265 3.1
9 5a9z:AI 153 46 0.0736 0.0784 0.2609 4.1 5aa0:AI, 6gsl:38, 5hau:1J, 5hau:2J, 5imq:2, 5imr:2, 5j8b:J, 6qnq:38, 4v6f:DY, 4v7j:AJ, 4v7j:BJ, 4v7k:AJ, 4v7k:BJ, 4w2e:J, 4wpo:AK, 4wpo:CK, 4wqf:AK, 4wqf:CK, 4wqu:AK, 4wqu:CK, 4wqy:AK, 4wqy:CK, 5zlu:e
10 3kak:B 437 43 0.1043 0.0389 0.3953 4.6
11 3kal:A 470 43 0.1043 0.0362 0.3953 4.9 3kak:A, 3kal:B
12 6s1r:A 391 104 0.1656 0.0691 0.2596 5.6 5wjc:A
13 5gp4:A 441 33 0.0613 0.0227 0.3030 5.9 5gp4:C, 5gp4:B
14 6pwy:B 513 38 0.0859 0.0273 0.3684 7.3 6pwy:A, 6pwy:D, 6pwy:C
15 4ii1:B 139 21 0.0552 0.0647 0.4286 8.2 4ii1:A, 4ii1:C, 4ii1:D
16 2d9n:A 77 21 0.0613 0.1299 0.4762 8.2 2rhk:C
17 3a9c:B 325 34 0.0675 0.0338 0.3235 9.7 3a9c:A, 3a9c:C, 3a9c:D, 3a9c:E, 3a9c:F, 3vm6:A, 3vm6:B, 3vm6:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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