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BioLiP
>protein
RNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDEIDGAAELDRTEEYALGVVGVLESYIGSINNI
TKQSACVAMSKLLTELNSDDIKKLRDNEELNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIKNTLDIHKS
ITIN

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3b:C 178 171 0.9939 0.9157 0.9532 3.24e-118 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
2 6pzq:A 157 164 0.9390 0.9809 0.9390 2.40e-110 6pzq:C
3 4cs7:C 172 161 0.3720 0.3547 0.3789 1.02e-37 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
4 2cqe:A 98 22 0.0671 0.1122 0.5000 1.1
5 8c3a:k 386 43 0.0976 0.0415 0.3721 1.5 8c3a:AX, 8cq7:k, 8cq7:AX, 8cqw:k, 8cqw:AX, 8cre:k, 8cre:AX, 8oeq:k, 8oeq:AX, 7pzy:k, 7q08:k, 7q0f:k, 7q0p:k, 7q0r:k, 8q5i:k
6 8v87:B 336 71 0.1159 0.0565 0.2676 2.9 6c0f:B, 6em1:B, 6em4:B, 7nac:B, 7ohp:B, 7ohr:B, 7ohs:B, 7ohu:B, 7ohw:B, 7ohx:B, 7ohy:B, 7r7a:B, 8v83:B, 8v84:B, 5z3g:F
7 2zba:D 391 49 0.0976 0.0409 0.3265 3.0
8 2zba:A 435 49 0.0976 0.0368 0.3265 3.2 2zba:B, 2zba:C
9 8dmf:A 718 42 0.0793 0.0181 0.3095 4.0 7uvp:A
10 3kak:B 437 43 0.1037 0.0389 0.3953 4.7
11 3kal:A 470 43 0.1037 0.0362 0.3953 5.2 3kak:A, 3kal:B
12 5gp4:A 441 33 0.0610 0.0227 0.3030 5.5 5gp4:C, 5gp4:B
13 8ro0:O 342 36 0.0854 0.0409 0.3889 6.5 8ro1:O
14 6njw:A 208 86 0.1341 0.1058 0.2558 6.9 6njv:A
15 6pwy:B 513 38 0.0854 0.0273 0.3684 7.9 6pwy:A, 6pwy:D, 6pwy:C
16 4ii1:B 139 21 0.0549 0.0647 0.4286 8.0 4ii1:A, 4ii1:C, 4ii1:D
17 2d9n:A 77 21 0.0610 0.1299 0.4762 8.7 2rhk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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