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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RNLRVLLDTAIPPSFCDTVSSVLLDDFNMVSLIRTSPADSLATIKQDNAEIDIAITIDEELKISRFNQCVLGYTKAFVVA
HPQHPLCNASLHSIASLANYRQISLGSRSGQHSNLLRPVSDKVLFVENFDDMLRLVEAGVGWGIAPHYFVEERLRNGTLA
VLSELYEPGGIDTKVYCYYNTALESERSFLRFLESARQRLRELGRQ

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yiz:A 211 206 1.0000 0.9763 1.0000 1.39e-153 6b8a:A, 6b8a:B, 4jvd:A, 4jvi:A, 7nbw:A, 7o2t:AAA, 7o2u:AAA, 7p4u:A, 8q5k:A, 8q5l:A, 6q7u:A, 6q7v:A, 6q7v:B, 6q7w:A, 7qa0:A, 7qa0:B, 7qa3:A, 7qa3:B, 7qav:A, 7qav:B, 6tpr:A, 6yiz:B, 6yz3:AAA, 6z07:AAA, 6z17:AAA, 6z5k:AAA
2 3fd3:A 207 69 0.1068 0.1063 0.3188 0.62
3 6xtv:B 290 69 0.1068 0.0759 0.3188 0.65
4 2wle:C 211 106 0.1408 0.1374 0.2736 2.3 2wle:A, 2wle:B, 2wlf:A, 2wlf:C, 2wlf:B, 2wlg:A, 2wlg:C, 2wlg:B
5 3e49:A 307 49 0.0874 0.0586 0.3673 3.9 3e49:B, 3e49:C, 3e49:D
6 6gbn:B 435 59 0.0777 0.0368 0.2712 4.3 6gbn:A, 6gbn:C, 6gbn:D
7 7yh2:A 156 32 0.0680 0.0897 0.4375 4.4 7yh2:B
8 1umg:A 359 114 0.1311 0.0752 0.2368 4.7 3r1m:A
9 6nu2:z 204 75 0.0971 0.0980 0.2667 9.5 7l08:z, 7l20:z, 7nsh:BG, 7nsi:BG, 6zs9:A5
10 6cw3:G 92 52 0.0777 0.1739 0.3077 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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