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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RNLRVLLDTAIPPSFCDTVSSVLLDDFNMVSLIRTSPADSLATIKQDNAEIDIAITIDEELKISRFNQCVLGYTKAFVVA
HPQHPLCNASLHSIASLANYRQISLGSRSGQHSNLLRPVSDKVLFVENFDDMLRLVEAGVGWGIAPHYFVEERLRNGTLA
VLSELYEPGGIDTKVYCYYNTALESERSFLRFLESARQRLRELG

The query sequence (length=204) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yiz:A 211 204 1.0000 0.9668 1.0000 6.90e-152 6b8a:A, 6b8a:B, 4jvd:A, 4jvi:A, 7nbw:A, 7o2t:AAA, 7o2u:AAA, 7p4u:A, 8q5k:A, 8q5l:A, 6q7u:A, 6q7v:A, 6q7v:B, 6q7w:A, 7qa0:A, 7qa0:B, 7qa3:A, 7qa3:B, 7qav:A, 7qav:B, 6tpr:A, 6yiz:B, 6yz3:AAA, 6z07:AAA, 6z17:AAA, 6z5k:AAA
2 6xtv:B 290 69 0.1078 0.0759 0.3188 0.63
3 3fd3:A 207 69 0.1078 0.1063 0.3188 0.63
4 2wle:C 211 106 0.1422 0.1374 0.2736 2.3 2wle:A, 2wle:B, 2wlf:A, 2wlf:C, 2wlf:B, 2wlg:A, 2wlg:C, 2wlg:B
5 3e49:A 307 49 0.0882 0.0586 0.3673 3.8 3e49:B, 3e49:C, 3e49:D
6 6gbn:B 435 59 0.0784 0.0368 0.2712 4.5 6gbn:A, 6gbn:C, 6gbn:D
7 1umg:A 359 114 0.1324 0.0752 0.2368 4.7 3r1m:A
8 5vsu:A 387 142 0.1765 0.0930 0.2535 8.2 6aso:A, 2kh9:A, 4n0t:A, 5tf6:A, 5tf6:C
9 6cw3:G 92 52 0.0784 0.1739 0.3077 9.2
10 6nu2:z 204 75 0.0980 0.0980 0.2667 9.6 7l08:z, 7l20:z, 7nsh:BG, 7nsi:BG, 6zs9:A5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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