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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RNLMIVDGTNLGFRFKKPFASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQF
FEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDMYEHH
NVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEELLFRNLILVDLPT
YCVDAIAAVGQDVLDKFTKDILEIAE

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hnk:A 272 271 0.9962 0.9743 0.9779 0.0 5hml:A, 5hml:B, 5hmm:A, 5hnk:B, 5hp4:A, 1ut5:A
2 3zd9:A 249 235 0.2180 0.2329 0.2468 1.37e-09 3zd8:A, 3zd8:B, 3zda:A, 3zdb:A, 3zdc:A, 3zdd:A
3 1taq:A 807 130 0.1278 0.0421 0.2615 3.95e-04 4bwj:A, 4bwm:A, 4c8k:A, 4c8l:A, 4c8m:A, 4c8n:A, 4c8o:A, 4cch:A, 4df4:A, 4df8:A, 4dfj:A, 4dfk:A, 4dfm:A, 4dfp:A, 4dle:A, 4dlg:A, 5e41:A, 4elt:A, 4elu:A, 4elv:A, 6fbc:A, 6fbd:A, 6fbe:A, 6fbf:A, 6fbg:A, 6fbh:A, 6fbi:A, 2ktq:A, 3ktq:A, 4ktq:A, 5ktq:A, 3lwl:A, 3lwm:A, 3m8r:A, 3m8s:A, 4n5s:A, 5nkl:A, 5o7t:A, 3ojs:A, 3oju:A, 7owf:A, 5oxj:A, 3po4:A, 3po5:A, 3py8:A, 6q4u:A, 6q4v:A, 1qss:A, 1qsy:A, 1qtm:A, 3rr7:A, 3rr8:A, 3rrg:A, 3rrh:A, 3rtv:A, 3sv3:A, 3sv4:A, 3syz:A, 3sz2:A, 5szt:A, 3t3f:A, 1tau:A, 5w6k:A, 5w6q:C, 5w6q:G, 4xiu:A, 5ytc:A, 5ytd:A, 5yte:A, 5ytf:A, 5ytg:A, 5yth:A, 5z3n:A
4 6c33:A 317 234 0.1880 0.1577 0.2137 0.002 6c34:A, 6c35:A, 6c36:A
5 1fnn:A 379 93 0.1053 0.0739 0.3011 0.016 1fnn:B
6 1yaa:A 412 55 0.0639 0.0413 0.3091 0.30 1yaa:B, 1yaa:C, 1yaa:D
7 1a76:A 315 121 0.1391 0.1175 0.3058 0.96 1a77:A
8 1yl5:A 247 110 0.1053 0.1134 0.2545 1.00 1c3v:A, 1c3v:B, 1p9l:A, 1p9l:B, 5tjy:A, 5tjz:A, 5ugv:A, 5ugv:B, 1yl5:B, 1yl6:A, 1yl6:B, 1yl7:A, 1yl7:B, 1yl7:C, 1yl7:D, 1yl7:E, 1yl7:F, 1yl7:G, 1yl7:H
9 1rxv:A 305 70 0.0752 0.0656 0.2857 3.5 1rxv:B, 1rxw:A
10 3hkv:A 192 65 0.0526 0.0729 0.2154 3.8 6fxi:A, 6fxi:B, 3hkv:B, 5lx6:A, 5lx6:B
11 4q0z:A 322 173 0.1504 0.1242 0.2312 4.1 4q0w:A, 4q0z:B, 4q0z:E, 4q0z:F
12 8hir:A 918 44 0.0602 0.0174 0.3636 9.8 8hir:B, 8hir:C, 8hir:D, 8hk6:A, 8hk6:B, 8hk6:C, 8hk6:D, 8hkf:A, 8hkf:B, 8hkf:C, 8hkf:D, 8hkk:A, 8hkk:B, 8hkk:C, 8hkk:D, 8hkm:A, 8hkm:B, 8hkm:C, 8hkm:D, 8hkq:D, 8hkq:A, 8hkq:C, 8hkq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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