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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RNHDVLSRMISEKAALHGLLNCLIKEFAIPEGYLRYEWPDEMKGIPPGAYFDGADWKGIPMMIGLPDQLQLFVMVDRRDT
FGSQHYLSDVYLRQAQGDWQCPDFEPLVARLLAACEHIAGRKNPELYEQILQSQRLVSAIVSHNGRQRADAPLQHYLQSE
QGLWFGHPSHPAPKARLWPHLGQEQWAPEFQARAALHQFEVPVDGLHIGANGLTPQQVLDGFADQQPASPGHAIICMHPV
QAQLFMQDARVQQLLRDNVIRDLGQSGRVASPTASIRTWFIDDHDYFIKGSLNVRITNCVRKNAWYELESTVLIDRLFRQ
LLDQHADTLGGLVAAAEPGVVSWSPAAAGELDSHWFREQTGGILRENFCRRTGAERSIMAGTLFARGVDLQPMIQTFLRT
HYGEALDDNALLYWFDDYQTRLLRPVLSLFFNHGVVMEPHLQNSVLVHQQGRPQQVLLRDFEGVKLTDDLGIRYIDDDIH
PRVRQSLLYSREQGWNRIMYCLFINHLSETILALSQGRPQLAPLMWRRVQQQLRAIQGELKQPSPELDALIAGHPVACKT
NLKVRLAAASYVRLPSPW

The query sequence (length=578) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2x3j:A 586 584 1.0000 0.9863 0.9897 0.0 2w02:A, 2w02:B, 2w03:A, 2w03:B, 2w04:B, 2x3j:B, 2x3k:A, 2x3k:B
2 5jm8:A 556 407 0.1817 0.1888 0.2580 1.20e-13 5jm8:B, 5jm8:C, 5jm8:D, 5jm8:E, 5jm8:F, 5jm8:G, 5jm8:H
3 3to3:B 595 334 0.1367 0.1328 0.2365 2.87e-09
4 2x0q:A 582 199 0.0830 0.0825 0.2412 3.19e-04 2x0p:A
5 7tgk:D 593 331 0.1280 0.1248 0.2236 0.023 7tgk:B, 7tgk:E, 7tgk:A, 7tgk:C, 7tgl:A, 7tgl:B, 7tgl:C, 7tgl:D, 7tgl:E, 7tgm:A, 7tgm:B, 7tgm:C, 7tgm:E, 7tgm:D
6 7cbb:A 576 63 0.0346 0.0347 0.3175 0.044 7cbb:B
7 7tgn:B 576 320 0.1125 0.1128 0.2031 0.33 7tgn:A, 7tgn:C, 7tgn:D
8 6kpm:A 295 54 0.0242 0.0475 0.2593 1.0 6kpn:A, 6kpo:A
9 1jjv:A 194 64 0.0381 0.1134 0.3438 3.0
10 7jj9:A 461 74 0.0381 0.0477 0.2973 3.6 7jj8:B, 7jj8:A, 7jj8:C, 7jj8:D, 7jja:A, 7jjb:A
11 7obr:x 488 60 0.0242 0.0287 0.2333 6.1 2go5:W, 2j37:W, 5l3q:A, 5l3q:C, 1mfq:C, 7nfx:x, 7qwq:x, 1ry1:W, 4ue5:D, 6y2z:A, 6y32:A, 6y32:C, 6y32:E, 6y32:G
12 7vua:A 785 85 0.0346 0.0255 0.2353 6.8 7vua:B
13 3jaj:z 426 60 0.0242 0.0329 0.2333 7.2 6frk:x, 3jan:z, 7obq:x, 6r6g:AB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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