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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RMTWNFHQYYTNRNDGLMGKLVLTDEEKNNLKALRKIIRLRTRDVFEEAKGIAKAVKKSALTFEIIQEKVSTTQIKHLSD
SEQREVAKLIYEMDDDARDEFLGLTPRFWTQGSFQYDTLNRPFQPGQEMDIDDGTYMPMPIKIGHSLLILLVDASLKSLV
AENHGWKFEAKQTCGRIKIEAEKTHIDVPMYAIPKGSENVNLALREGDRKWINSDPKIVEDWFNDSCIRIGKHLRKVCRF
MKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAKHLPSEFARGVESPDSTDEKPLFPPSYKHGPREMD
IMSKLERLPEILSSAESADSKSEALKKINMAFGNRVTNSELIVLAKA

The query sequence (length=367) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xj3:A 369 369 1.0000 0.9946 0.9946 0.0 4txy:B, 4txz:B, 4ty0:B, 4xj5:A
2 4u03:A 389 389 0.9918 0.9357 0.9357 0.0 4txy:A, 4txz:A, 4ty0:A, 4u03:B, 4u0m:A, 4u0m:B, 4u0n:A, 4u0n:B, 4xj4:A
3 4xj6:A 370 367 0.6376 0.6324 0.6376 1.17e-167
4 7ljo:A 290 255 0.1989 0.2517 0.2863 1.53e-09
5 7ocn:A 690 102 0.0872 0.0464 0.3137 0.14 7ocn:B, 7ocp:A, 7ocp:B, 7ocq:A, 7ocq:B, 7ocr:A, 7ocr:B, 7ocs:A, 7ocs:B, 7ocs:C, 7ocs:D, 7oct:A, 7oct:B, 7ocu:A, 7ocu:B
6 1w2t:A 432 103 0.0763 0.0648 0.2718 1.5 1w2t:B, 1w2t:C, 1w2t:D, 1w2t:E, 1w2t:F
7 7bqz:A 215 70 0.0436 0.0744 0.2286 2.5 7bqz:C, 7bqz:E, 7bqz:G, 7bu9:A, 7bu9:C, 7bu9:E, 7bu9:G, 7cna:D, 7cna:A, 7e9m:A, 7e9m:C, 7ea1:A, 8gtx:A, 4h75:A, 5jsg:A, 5jsg:B, 5jsj:A, 5jsj:B, 4mzf:B, 4mzg:B, 4mzg:D, 4mzh:A, 2ns2:A, 7ocb:B, 5y5w:A, 5y5w:C
8 7amv:K 708 41 0.0381 0.0198 0.3415 3.1 8c8h:K, 6rfl:K
9 2y27:B 427 44 0.0463 0.0398 0.3864 3.6 2y27:A, 2y4n:A, 2y4n:B
10 4oau:C 692 92 0.0681 0.0361 0.2717 5.3 4g8l:A, 4g8l:B, 4g8l:C, 4g8l:D, 4oav:B, 4oav:D, 1wdy:A
11 4fcy:B 476 78 0.0599 0.0462 0.2821 7.1
12 2x1e:A 354 45 0.0490 0.0508 0.4000 9.2
13 7x07:A 633 31 0.0300 0.0174 0.3548 9.2 7shn:A, 7shn:B, 7vzb:A, 7vzb:B, 7x0t:A, 7x0t:B, 7x1w:A, 7x1w:B, 7xec:A, 7yrq:A, 7yrq:B
14 7a19:A 339 49 0.0409 0.0442 0.3061 9.5 7a19:B, 7a1a:A, 7a1a:B, 7wjr:A, 7wjr:B, 7wjr:C, 7wjr:D, 7wkl:A, 7wkl:B, 7wkl:C, 7wkl:D, 7wkm:A, 7wkm:B, 7wmb:A, 7wmb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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