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BioLiP
>protein
RMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8eml:A 58 57 1.0000 0.9828 1.0000 4.92e-36 8eml:B
2 2h1k:B 60 57 0.6491 0.6167 0.6491 5.88e-21 2h1k:A
3 1b72:A 68 55 0.6491 0.5441 0.6727 8.22e-20
4 2r5z:A 75 57 0.6491 0.4933 0.6491 1.60e-19 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
5 1puf:A 77 54 0.6140 0.4545 0.6481 1.72e-18 2lp0:A
6 1ahd:P 68 57 0.6316 0.5294 0.6316 2.07e-18
7 4uus:A 67 55 0.5965 0.5075 0.6182 5.30e-18 4uus:E
8 2me6:A 71 56 0.6491 0.5211 0.6607 1.17e-17
9 4cyc:A 66 55 0.5965 0.5152 0.6182 1.19e-17 1b8i:A
10 1jgg:A 57 57 0.5614 0.5614 0.5614 3.80e-17 1jgg:B
11 1ig7:A 58 56 0.5439 0.5345 0.5536 1.47e-15
12 2ld5:A 67 56 0.5088 0.4328 0.5179 1.91e-15
13 5zjr:A 64 54 0.5263 0.4688 0.5556 9.84e-15 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
14 6es3:K 72 56 0.5088 0.4028 0.5179 3.78e-14 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
15 5eea:G 63 54 0.4561 0.4127 0.4815 5.49e-14 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
16 8pna:A 67 57 0.4912 0.4179 0.4912 8.22e-14 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
17 6m3d:C 108 56 0.5088 0.2685 0.5179 1.18e-13 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
18 6m3d:C 108 53 0.4386 0.2315 0.4717 5.76e-12 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
19 1zq3:P 68 55 0.4737 0.3971 0.4909 5.14e-13
20 2lkx:A 68 56 0.5088 0.4265 0.5179 9.59e-13
21 4rdu:D 62 56 0.4737 0.4355 0.4821 4.91e-12 4rdu:A, 4xrs:I, 4xrs:G
22 3a01:F 61 57 0.4737 0.4426 0.4737 5.01e-12 3a01:B, 3lnq:A
23 3rkq:A 58 55 0.4737 0.4655 0.4909 5.11e-12 3rkq:B
24 3a01:A 78 57 0.4211 0.3077 0.4211 4.17e-11 3a01:E
25 1fjl:A 65 57 0.4386 0.3846 0.4386 4.71e-11 1fjl:B, 1fjl:C
26 5flv:M 229 52 0.4561 0.1135 0.5000 1.54e-10 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
27 4rbo:A 55 53 0.4737 0.4909 0.5094 1.82e-10 4rbo:D
28 8osb:E 62 56 0.4561 0.4194 0.4643 4.06e-10
29 1nk2:P 77 54 0.4561 0.3377 0.4815 5.08e-10 1nk3:P
30 3cmy:A 60 57 0.4386 0.4167 0.4386 1.41e-09
31 9b8u:B 66 49 0.3860 0.3333 0.4490 5.79e-08 9b8u:A, 9b8u:C, 9b8u:D
32 6e8c:A 135 55 0.3860 0.1630 0.4000 1.12e-07 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 56 0.3158 0.1333 0.3214 0.002 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 4qtr:C 57 54 0.4211 0.4211 0.4444 1.18e-07 4qtr:A, 4qtr:B, 4qtr:D
35 8ejo:A 56 54 0.3333 0.3393 0.3519 6.65e-07 8ejo:B, 8ejp:A, 8ejp:B
36 5hod:A 61 56 0.3333 0.3115 0.3393 1.53e-05 5hod:D
37 8ik5:C 67 56 0.3509 0.2985 0.3571 0.002 8ike:C, 8ilw:C
38 3d1n:I 150 49 0.2982 0.1133 0.3469 0.010 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
39 1gt0:C 137 54 0.2982 0.1241 0.3148 0.011 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
40 1lfu:P 82 37 0.2456 0.1707 0.3784 0.023 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
41 5wc9:A 136 54 0.3158 0.1324 0.3333 0.029 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
42 4egc:A 539 42 0.2456 0.0260 0.3333 0.080
43 1le8:A 53 42 0.2281 0.2453 0.3095 0.15 1akh:A, 1yrn:A
44 3l1p:A 147 25 0.2105 0.0816 0.4800 0.20 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
45 8bx1:A 127 24 0.2105 0.0945 0.5000 0.22
46 8g8e:X 140 25 0.2105 0.0857 0.4800 0.41 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
47 7xrc:C 134 25 0.1930 0.0821 0.4400 0.78 2xsd:C
48 3qp6:A 258 36 0.2632 0.0581 0.4167 2.4 3qp8:A, 3qp8:B, 3qp8:C, 3qp8:D
49 1lr5:D 160 29 0.1754 0.0625 0.3448 4.1 1lr5:C, 1lr5:B, 1lr5:A, 1lrh:D, 1lrh:C, 1lrh:B, 1lrh:A
50 6pwf:K 454 35 0.2456 0.0308 0.4000 6.3
51 6njo:D 413 24 0.1754 0.0242 0.4167 8.0 6njo:B, 6njo:A, 6njo:C, 6njo:E, 6njp:B, 6njp:C, 6njp:D, 6njp:E, 2obl:A, 2obm:A
52 8a5r:AAA 206 26 0.2105 0.0583 0.4615 8.2 8a5s:AAA, 3p7n:A, 3p7n:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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