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BioLiP
>protein
RMKQLEDKVEELLSKAYHLENEVARLKKLVGE

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ysa:C 57 32 0.9688 0.5439 0.9688 2.13e-15 1dgc:A, 2dgc:A, 1ysa:D
2 3i5c:B 198 30 0.9062 0.1465 0.9667 1.07e-12 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
3 5apw:B 64 29 0.8750 0.4375 0.9655 1.35e-12
4 5apw:B 64 30 0.8438 0.4219 0.9000 2.55e-12
5 1llm:C 87 28 0.8438 0.3103 0.9643 4.58e-12 1llm:D
6 3crp:B 34 32 0.8125 0.7647 0.8125 1.14e-11 2b1f:A, 2b1f:C, 3crp:C
7 1uo4:B 31 31 0.7188 0.7419 0.7419 5.78e-11 1uo5:A
8 2bni:C 34 32 0.6875 0.6471 0.6875 6.24e-11 2bni:D, 1u9h:A
9 1fav:A 78 28 0.6250 0.2564 0.7143 1.72e-10 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
10 1uny:B 30 30 0.6875 0.7333 0.7333 8.71e-10
11 1czq:A 45 30 0.5938 0.4222 0.6333 1.02e-07 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
12 2r2v:C 33 32 0.5625 0.5455 0.5625 1.02e-06 2r2v:D
13 4hjb:C 30 31 0.5938 0.6333 0.6129 2.95e-06 4hjb:D
14 3w8v:A 32 32 0.6250 0.6250 0.6250 6.87e-05 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
15 3hf0:A 30 16 0.3125 0.3333 0.6250 4.5
16 4oo8:A 1301 22 0.3125 0.0077 0.4545 8.5 4zt0:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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