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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRF
HKRSPYRVTMNYAFGQVIEGCASDRETWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRME
NASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSP

The query sequence (length=229) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dpt:A 232 231 1.0000 0.9871 0.9913 2.22e-171 2dpt:B, 2z3k:A, 2z3k:B, 2z3l:B, 2z3l:A, 2z3m:A, 2z3m:B, 2z3n:A, 2z3n:B, 2z3o:A, 2z3o:B, 2z3p:A, 2z3p:B
2 6yw5:BB 290 45 0.0655 0.0517 0.3333 2.1 6ywe:BB, 6ywx:BB, 6ywy:BB
3 3m7p:A 301 43 0.0611 0.0465 0.3256 2.4
4 7qvw:AAA 597 24 0.0437 0.0168 0.4167 3.3 1qhb:A, 1qhb:B, 1qhb:C, 1qhb:D, 1qhb:E, 1qhb:F, 7qvw:BBB, 7qvw:CCC, 7qvw:DDD, 7qw3:AAA, 7qw3:BBB, 7qw3:CCC, 7qw3:DDD, 7qwi:AAA, 7qwi:BBB, 7qwi:CCC, 7qwi:DDD, 7qyy:AAA, 7qyy:BBB, 7qyy:CCC, 7qyy:DDD, 1up8:A, 1up8:B, 1up8:C, 1up8:D
5 6ofs:A 905 34 0.0568 0.0144 0.3824 3.5
6 8t4e:B 551 65 0.0786 0.0327 0.2769 3.7 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B
7 1j70:A 512 74 0.0917 0.0410 0.2838 5.1 1g8f:A, 1g8g:A, 1g8g:B, 1g8h:A, 1g8h:B, 1j70:B, 1j70:C, 1jec:A, 1jed:A, 1jed:B, 1jee:A, 1jee:B, 1r6x:A
8 2e40:A 459 58 0.0786 0.0392 0.3103 9.5 2e40:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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