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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASE
PGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQP
GGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWNPEWQVLTNPNYLAIFQAFGKA
CSKRAGQR

The query sequence (length=248) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d50:B 255 248 1.0000 0.9725 1.0000 0.0 7d4r:A, 7d50:A, 7d53:A, 7d53:B, 7d53:C, 7d53:D
2 7d4r:B 215 245 0.8629 0.9953 0.8735 9.85e-150
3 6vtv:B 252 249 0.4395 0.4325 0.4378 4.13e-61 6vtv:A
4 3fij:A 224 224 0.3145 0.3482 0.3482 8.11e-35 3fij:B, 3fij:C, 3fij:D, 3fij:E, 3fij:F, 3fij:G, 3fij:H
5 2vxo:B 658 129 0.1573 0.0593 0.3023 4.87e-06 2vxo:A
6 5tw7:F 490 143 0.1653 0.0837 0.2867 0.002 5tw7:E
7 7yc6:A 183 145 0.1371 0.1858 0.2345 0.004
8 8hx8:A 673 131 0.1532 0.0565 0.2901 0.010 8hx6:A, 8hx6:B, 8hx7:A, 8hx7:B, 8hx8:B, 8hx9:B
9 7d54:A 242 43 0.0726 0.0744 0.4186 0.013 7d54:B
10 2ywc:A 475 137 0.1653 0.0863 0.2993 0.019 2ywc:B, 2ywc:C, 2ywc:D
11 1vco:A 531 147 0.1734 0.0810 0.2925 0.051 1vcn:A
12 7fj3:m 1311 117 0.1169 0.0221 0.2479 0.11 7fj3:g, 7fj3:A, 7fj3:y
13 6sup:A 2128 65 0.0927 0.0108 0.3538 0.15
14 3dv9:A 243 58 0.0766 0.0782 0.3276 0.24
15 1gpm:A 501 24 0.0444 0.0220 0.4583 1.0 1gpm:B, 1gpm:C, 1gpm:D
16 4a36:A 523 40 0.0524 0.0249 0.3250 1.3 4a36:B
17 6tv0:A 155 50 0.0766 0.1226 0.3800 1.8 6tv0:J, 6tv0:G, 6tv0:I, 6tv0:B, 6tv0:E, 6tv0:C, 6tv0:H, 6tv0:D, 6tv0:F, 4y42:B, 4y42:H, 4y42:I, 4y42:J
18 1ox4:B 538 30 0.0484 0.0223 0.4000 4.3 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
19 1i7q:B 192 38 0.0484 0.0625 0.3158 6.6 1i7q:D
20 5aqe:A 269 61 0.0766 0.0706 0.3115 7.1 5arb:A, 5arc:A, 5ard:A, 3bx1:A, 3bx1:B, 1c9j:A, 1c9m:A, 1c9n:A, 4cfy:A, 4cfz:A, 4cg0:A, 1gci:A, 1iav:A, 1jea:A, 1mpt:A, 1ndq:A, 1ndu:A, 1q5p:A, 1st3:A, 1svn:A, 1tk2:A, 1wsd:A, 6y5s:A, 6y5t:A
21 3ml4:C 208 50 0.0605 0.0721 0.3000 7.6 3ml4:A, 3ml4:B, 3ml4:D
22 8s5h:A 507 35 0.0484 0.0237 0.3429 8.1 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
23 4wio:A 525 208 0.1532 0.0724 0.1827 8.2 3uow:A
24 7mii:A 497 141 0.1411 0.0704 0.2482 8.2 7mih:A, 7mih:B, 7mih:C, 7mih:E, 7mii:B, 7mii:C, 7mii:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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