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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RLPKARFIAKSGACNLAHKNIREQGRFLQDIFTTLVDLKWRHTLVIFTMSFLCSWLLFAIMWWLVAFAHGDIYAYMEKGI
TEKSGLESAVCVTNVRSFTSAFLFSIEVQVTIGFGGRMMTEECPLAITVLILQNIVGLIINAVMLGCIFMKTAQAHRRAE
TLIFSRHAVIAVRNGKLCFMFRVGDLRKSMIISASVRIQVVKKTTTPEGEVVPIHQQDIPVDNPIESNNIFLVAPLIICH
VIDKRSPLYDISATDLVNQDLEVIVILEGVVETTGITTQARTSYIAEEIQWGHRFVSIVTEEEGVYSVDYSKFGNTVRVA
APRCSARELDEKPSILIQ

The query sequence (length=338) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mjp:A 366 337 0.9970 0.9208 1.0000 0.0 7mit:A, 7mit:B, 7mit:C, 7mit:D, 7mjo:A, 7mjo:B, 7mjo:C, 7mjo:D, 7mjp:B, 7mjp:D, 7mjq:A, 7mjq:B, 7mjq:C
2 7tys:A 361 331 0.7160 0.6704 0.7311 0.0 6baa:A, 6baa:D, 6baa:B, 6baa:C, 6c3o:A, 6c3o:B, 6c3o:C, 6c3o:D, 6c3p:A, 6c3p:B, 6c3p:D, 6c3p:C, 6jb1:A, 6jb1:G, 6jb1:C, 6jb1:E, 8ti1:D, 8ti1:A, 8ti1:B, 8ti1:C, 8ti2:D, 8ti2:A, 8ti2:B, 8ti2:C, 5twv:A, 5twv:C, 5twv:E, 5twv:G, 7tys:D, 7tys:B, 7tys:C, 7tyt:A, 7tyt:D, 7tyt:B, 7tyt:C, 7u1e:B, 7u1e:C, 7u1e:D, 7u1e:A, 7u1q:A, 7u1q:B, 7u1q:C, 7u1q:D, 7u1s:A, 7u1s:D, 7u1s:B, 7u1s:C, 7u24:A, 7u24:D, 7u24:B, 7u24:C, 7u6y:A, 7u6y:B, 7u6y:C, 7u6y:D, 7uaa:B, 7uaa:C, 7uaa:D, 7w4p:A, 7w4p:C, 7w4p:E, 7w4p:G, 5ykf:A, 5ykf:C, 5ykf:E, 5ykf:G, 5ykg:A, 5ykg:C, 5ykg:E, 5ykg:G, 5yw8:C, 5yw8:E, 5yw8:G, 5yw8:A, 5yw9:C, 5yw9:E, 5yw9:G, 5yw9:A, 5ywa:A, 5ywa:C, 5ywa:E, 5ywa:G, 5ywb:A, 5ywb:C, 5ywb:E, 5ywb:G, 5ywc:A, 5ywc:C, 5ywc:E, 5ywc:G
3 4kfm:A 328 326 0.4822 0.4970 0.5000 4.97e-123 3auw:B, 3auw:D, 3sya:A, 3syo:A, 6xeu:A, 6xeu:D, 6xeu:G, 6xeu:J, 6xev:A, 6xev:E, 6xev:I, 6xev:M, 6xit:A, 6xit:B, 6xit:C, 6xit:D
4 3spg:A 332 337 0.4822 0.4910 0.4837 5.31e-113 5kuk:A, 5kum:A, 6m84:A, 3spc:A, 3sph:A, 3spi:A
5 3syq:A 292 326 0.4497 0.5205 0.4663 3.24e-107
6 8i5m:A 310 319 0.3787 0.4129 0.4013 4.21e-79 8i5m:B, 8i5m:C, 8i5m:D, 8i5n:A, 8i5n:B, 8i5n:C, 8i5n:D
7 2wll:B 266 220 0.1834 0.2331 0.2818 6.11e-27
8 2x6b:A 287 311 0.2515 0.2962 0.2733 1.44e-22 7n9k:A, 7n9l:A, 6o9t:A, 6o9u:A, 6o9v:A, 6o9v:B, 2x6a:A, 2x6c:A
9 1yt3:A 375 90 0.0769 0.0693 0.2889 0.73
10 1zb7:A 414 79 0.0680 0.0556 0.2911 1.0
11 8u0i:A 85 22 0.0325 0.1294 0.5000 4.9
12 7kri:A 127 25 0.0325 0.0866 0.4400 6.9 7kri:B, 7kri:C, 7n3k:A, 7n3k:B, 7n3k:C, 7n3k:D, 7n3k:E, 7n3k:F, 7n3k:G, 7n3k:H
13 5ogx:A 333 85 0.0621 0.0631 0.2471 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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