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BioLiP
>protein
RLPEAYVVFSPLVDVFPVIPVFFLLLAFVWQAAVGFR

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iwh:K 37 37 1.0000 1.0000 1.0000 2.11e-19 8iwh:k
2 6j3y:K 37 37 0.8919 0.8919 0.8919 3.96e-18 6j3y:k, 6j3z:K, 6j3z:k, 6j40:K, 6j40:k, 7vd5:K, 7vd5:k
3 8wb4:K 37 37 0.8378 0.8378 0.8378 1.78e-16 8wb4:k, 8xlp:k, 8xlp:K, 8xr6:K, 8xr6:k
4 7y5e:KL 37 36 0.8108 0.8108 0.8333 3.01e-16 7y5e:K6, 7y5e:k6, 7y5e:kL, 7y7a:K9, 7y7a:k9, 7y7a:KE, 7y7a:kE, 7y7a:KO, 7y7a:kO, 7y7a:KZ, 7y7a:kZ, 7y7a:Km, 7y7a:km
5 8wql:KD 36 36 0.8108 0.8333 0.8333 5.30e-16 8wql:KE, 8wql:K1, 8wql:k1, 8wql:kD, 8wql:kE
6 2axt:K 37 37 0.8108 0.8108 0.8108 1.05e-15 3a0b:K, 3a0b:k, 3a0h:K, 3a0h:k, 2axt:k, 5b5e:K, 5b5e:k, 5b66:K, 5b66:k, 7cji:K, 7cji:k, 7cjj:K, 7cjj:k, 7cou:K, 7cou:k, 7czl:K, 7czl:k, 7d1t:K, 7d1t:k, 7d1u:K, 7d1u:k, 6dhe:K, 6dhe:k, 6dhf:K, 6dhf:k, 6dhg:K, 6dhg:k, 6dhh:K, 6dhh:k, 6dho:K, 6dho:k, 6dhp:K, 6dhp:k, 7dxh:k, 5e79:K, 5e79:k, 5e7c:K, 5e7c:k, 7eda:K, 9evx:K, 9evx:k, 8ez5:K, 8ez5:k, 8f4c:K, 8f4c:k, 8f4d:K, 8f4d:k, 8f4e:K, 8f4e:k, 8f4f:K, 8f4g:K, 8f4g:k, 8f4h:K, 8f4h:k, 8f4i:K, 8f4i:k, 8f4j:K, 8f4j:k, 8f4k:K, 8f4k:k, 4fby:K, 4fby:c, 8gn0:K, 8gn0:k, 8gn1:k, 8gn1:K, 8gn2:K, 8gn2:k, 5gth:K, 5gth:k, 5gti:K, 5gti:k, 5h2f:K, 5h2f:k, 4il6:K, 4il6:k, 8ir5:K, 8ir5:k, 8ir6:K, 8ir6:k, 8ir7:K, 8ir7:k, 8ir8:K, 8ir8:k, 8ir9:K, 8ir9:k, 8ira:K, 8ira:k, 8irb:K, 8irb:k, 8irc:K, 8irc:k, 8ird:K, 8ird:k, 8ire:K, 8ire:k, 8irf:K, 8irf:k, 8irg:K, 8irg:k, 8irh:K, 8irh:k, 8iri:K, 8iri:k, 4ixq:K, 4ixq:k, 4ixr:K, 4ixr:k, 6jlj:K, 6jlj:k, 6jlk:K, 6jlk:k, 6jll:K, 6jll:k, 6jlm:K, 6jlm:k, 6jln:K, 6jln:k, 6jlo:K, 6jlo:k, 6jlp:K, 6jlp:k, 5kaf:K, 5kaf:k, 5kai:K, 5kai:k, 3kzi:K, 5mx2:K, 5mx2:k, 7nho:K, 7nhp:K, 7nhq:K, 4pbu:K, 4pbu:k, 4pj0:K, 4pj0:k, 7rf1:K, 7rf1:k, 7rf2:K, 7rf2:k, 7rf3:K, 7rf3:k, 7rf4:K, 7rf4:k, 7rf5:K, 7rf5:k, 7rf6:K, 7rf6:k, 7rf7:K, 7rf7:k, 7rf8:K, 7rf8:k, 4rvy:K, 4rvy:k, 1s5l:K, 1s5l:k, 5tis:K, 5tis:k, 4tnh:K, 4tnh:k, 4tni:K, 4tni:k, 4tnj:K, 4tnj:k, 4tnk:K, 4tnk:k, 4ub6:K, 4ub6:k, 4ub8:K, 4ub8:k, 5v2c:K, 5v2c:k, 4v62:AK, 4v62:BK, 4v82:AK, 4v82:BK, 6w1o:K, 6w1o:k, 6w1p:K, 6w1p:k, 6w1q:K, 6w1q:k, 6w1r:K, 6w1r:k, 6w1t:K, 6w1t:k, 6w1u:K, 6w1u:k, 6w1v:K, 6w1v:k, 6wj6:K, 5ws5:K, 5ws5:k, 5ws6:K, 5ws6:k, 3wu2:K, 3wu2:k, 7yq2:K, 7yq2:k, 7yq7:K, 7yq7:k, 5zzn:K, 5zzn:k
7 7n8o:K 37 37 0.7838 0.7838 0.7838 2.25e-15 7n8o:k, 7rcv:K, 7rcv:k, 8tow:K, 8tow:k
8 7ymi:K 37 37 0.7838 0.7838 0.7838 3.16e-15 7ymi:k, 7ymm:1K, 7ymm:2K, 7ymm:3K, 7ymm:4K
9 4yuu:K1 37 37 0.7027 0.7027 0.7027 5.66e-15 4yuu:k1, 4yuu:K2, 4yuu:k2
10 8eqm:K 37 37 0.7297 0.7297 0.7297 6.25e-15 8eqm:k, 7sa3:K
11 6kac:K 37 37 0.7838 0.7838 0.7838 7.96e-15 6kac:k, 6kad:K, 6kad:k, 6kaf:K, 8kde:K, 8r2i:K
12 8c29:K 37 37 0.7297 0.7297 0.7297 2.21e-14 8c29:k
13 7pi0:K 37 37 0.7297 0.7297 0.7297 3.04e-14 7pi0:k, 7pi5:K, 7pi5:k, 7pin:K, 7pin:k, 7pin:K1, 7pin:k1, 7piw:K, 7piw:k, 7piw:K1, 7piw:k1, 7pnk:K, 7pnk:k
14 8bd3:K 37 37 0.7297 0.7297 0.7297 1.88e-13 8bd3:k
15 8j5k:K 37 37 0.7297 0.7297 0.7297 2.59e-13 8j5k:k, 6jlu:K, 6jlu:k, 7oui:K, 7oui:k, 5xnl:K, 5xnl:k, 5xnm:K, 5xnm:k
16 3jcu:K 37 37 0.7297 0.7297 0.7297 2.96e-13 3jcu:k
17 7y4i:A 822 29 0.2703 0.0122 0.3448 5.4 8dti:A, 8dti:B
18 2ygq:A 241 17 0.2432 0.0373 0.5294 5.5
19 8hnv:A 745 23 0.2703 0.0134 0.4348 7.9
20 8hnw:A 809 23 0.2703 0.0124 0.4348 7.9
21 8hnt:A 1000 23 0.2703 0.0100 0.4348 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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