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BioLiP
>protein
RLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFR
FMKTPDEIMS

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8e67:F 97 90 0.9889 0.9175 0.9889 8.04e-63 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
2 1dux:C 86 84 0.4222 0.4419 0.4524 1.43e-23 1dux:F
3 8bzm:H 88 84 0.4111 0.4205 0.4405 2.23e-23 8bzm:B
4 4uuv:A 96 88 0.3889 0.3646 0.3977 5.74e-21 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
5 4bqa:A 132 96 0.4333 0.2955 0.4062 4.24e-20
6 6da1:B 138 96 0.4222 0.2754 0.3958 1.73e-19 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
7 1yo5:C 88 82 0.4444 0.4545 0.4878 2.92e-19
8 6vgd:A 98 79 0.3889 0.3571 0.4430 4.18e-19 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
9 3zp5:A 92 79 0.3778 0.3696 0.4304 1.96e-18
10 3jtg:A 95 85 0.3444 0.3263 0.3647 9.34e-18
11 7jsa:J 88 79 0.3556 0.3636 0.4051 2.85e-16 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
12 1awc:A 110 80 0.3444 0.2818 0.3875 3.73e-16
13 1hbx:G 112 70 0.3222 0.2589 0.4143 3.47e-15 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
14 8eo4:F 95 82 0.3222 0.3053 0.3537 5.70e-08 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 9ene:A 329 48 0.1889 0.0517 0.3542 0.059 9enb:A, 9enb:B, 9enc:A, 9enc:B, 9ene:B, 9enf:B, 8okd:A, 8okd:B
16 6woo:1 600 28 0.1111 0.0167 0.3571 0.75 4ncf:A, 4ncf:B, 3wbk:A
17 6uz7:1 600 28 0.1000 0.0150 0.3214 1.1 4v8y:CP
18 9enf:A 254 35 0.1333 0.0472 0.3429 1.8
19 4z7u:B 169 70 0.2000 0.1065 0.2571 1.8 4gg6:B
20 8vcx:B 191 70 0.2000 0.0942 0.2571 2.1 6dig:B, 4gg6:D, 1jk8:B, 7kei:B, 5ks9:D, 5ks9:B, 5ksa:B, 5ksb:D, 5ksb:B, 5ksu:B, 5ksu:E, 5ksv:B, 2nna:B, 4ozf:B, 4ozg:D, 4ozg:B, 4ozh:D, 4ozh:B, 4ozi:D, 4ozi:B, 1s9v:B, 1s9v:E, 7sg0:B, 7sg1:B, 7sg1:G, 7sg2:B, 7sg2:G, 6u3m:B, 6u3m:D, 6u3n:B, 6u3o:F, 6u3o:D, 5ujt:B, 5ujt:E, 5ujt:H, 1uvq:B, 8vcy:B, 8vd2:B, 8vdd:B, 8vdu:B, 8vdu:E, 8vdu:H, 8vdu:K, 6xp6:B, 6xp6:E, 4z7u:D, 4z7v:D, 4z7v:B, 4z7w:D, 4z7w:B
21 6wlw:U 205 36 0.1111 0.0488 0.2778 3.8 6wm2:U
22 3zl8:A 427 72 0.2222 0.0468 0.2778 3.9
23 1xvt:A 402 39 0.1444 0.0323 0.3333 4.3 1xa4:B, 1xvu:A, 1xvv:A
24 3gfa:A 197 45 0.1667 0.0761 0.3333 4.9 3gfa:B
25 7agv:F 163 31 0.1333 0.0736 0.3871 6.3 7agv:A, 7agv:B, 7agv:C, 7agv:D, 7agv:E, 7agv:G, 7agv:H, 7ahm:A, 7ahm:B, 7ahm:C, 7ahm:D
26 6ful:A 478 46 0.1333 0.0251 0.2609 7.0 5a1l:A, 5a1l:B, 3avr:A, 3avs:A, 6fuk:A, 5fxv:A, 5fxv:B, 5fxw:A, 5fxw:B, 5fxx:A, 5fxx:B, 5fxz:A, 5fxz:B, 5fy0:A, 5fy0:B, 5fy1:A, 5fy1:B, 5fy7:A, 5fy7:B, 5fym:A, 5fym:B, 6g8f:A, 4uf0:A, 4uf0:B, 3zli:A, 3zli:B, 3zpo:A, 3zpo:B
27 8k1l:A 979 29 0.1000 0.0092 0.3103 7.2
28 3oaj:A 310 72 0.2000 0.0581 0.2500 7.7 3oaj:B
29 7mca:C 584 21 0.1111 0.0171 0.4762 7.7 6rqc:C, 6wgi:C, 5zr1:C
30 8bpd:A 370 61 0.2222 0.0541 0.3279 7.9
31 7tjf:C 554 21 0.1111 0.0181 0.4762 8.5 7tjh:C, 7tji:C, 7tjj:C, 7tjk:C
32 8aaf:e 1527 59 0.1444 0.0085 0.2203 9.0 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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