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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RLKKPFVKVEDMSQLYRPFYLQLTNMPFINYSIQKPCSPFDGYCECCLQKYEDLETHLLSEQHRNFAQSNQYQVVDDIVS
KLVFDFVEYE

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ya7:B 107 94 1.0000 0.8411 0.9574 1.71e-61 4f99:B, 4f9a:B, 4f9a:D, 4f9b:B, 4f9b:D, 4f9c:B, 6ya6:B, 6ya8:B
2 7p5z:G 213 88 0.3444 0.1455 0.3523 5.10e-08
3 7v3v:I 328 44 0.2111 0.0579 0.4318 3.46e-07
4 7pt6:9 341 42 0.2000 0.0528 0.4286 1.27e-06 7pt6:I, 7pt7:9
5 7d5s:5K 175 44 0.1889 0.0971 0.3864 0.10 7ajt:UX, 7aju:UX, 7d4i:5K, 7d5t:5K, 7d63:5K, 6ke6:5K, 6lqp:5K, 6lqq:5K, 6lqr:5K, 6lqs:5K, 6lqt:5K, 6lqu:5K, 6lqv:5K, 7suk:SL, 5wlc:SL, 5wyj:U4, 5wyk:U4, 6zqb:UX, 6zqc:UX, 6zqd:UX, 6zqe:UX, 6zqg:UX
6 1vco:A 531 35 0.1333 0.0226 0.3429 1.7 1vcn:A
7 5bz1:A 371 21 0.1222 0.0296 0.5238 2.6 5bym:A, 5bz5:A, 5bzu:A, 5bzv:A
8 7tbl:e 313 37 0.1222 0.0351 0.2973 3.3
9 7ase:f 1523 41 0.1444 0.0085 0.3171 7.4 7ask:F
10 4biv:A 269 16 0.1000 0.0335 0.5625 7.8 4biu:C, 4biu:E, 4biu:F, 4biv:B, 4biw:A, 4biw:B, 4bix:A, 4biy:A, 4biy:C, 4biz:A, 4biz:C, 4biz:E, 4biz:F, 4cb0:A, 4cb0:B, 5lfk:A, 5lfk:B
11 3s2e:A 340 13 0.1000 0.0265 0.6923 7.9 3s1l:A, 3s1l:B, 3s1l:C, 3s1l:D, 3s2e:B, 3s2e:C, 3s2e:D, 3s2e:E, 3s2e:F, 3s2e:G, 3s2e:H, 3s2f:A, 3s2f:B, 3s2f:C, 3s2f:D, 3s2f:E, 3s2f:F, 3s2f:G, 3s2f:H, 3s2g:A, 3s2g:B, 3s2g:C, 3s2g:D, 3s2g:E, 3s2g:F, 3s2g:G, 3s2g:H, 3s2i:A, 3s2i:B, 3s2i:C, 3s2i:D, 3s2i:E, 3s2i:F, 3s2i:G, 3s2i:H
12 7uuk:C 276 34 0.1333 0.0435 0.3529 8.1 7jm1:A, 7jm1:C, 7jm1:B, 7jm2:A, 7jm2:C, 7jm2:B, 7uuj:A, 7uuj:C, 7uuj:B, 7uuk:A, 7uuk:B, 7uul:A, 7uul:B, 7uul:D, 7uul:C, 7uul:F, 7uul:E, 7uum:A, 7uun:A, 7uuo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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