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BioLiP
>protein
RLGSGGGVCGSVWGQNDIAYRCRTCENDPTCAICVPCFQNGDHNSHDYSIIYTGGGCCDCGDETAWKPDGFCSNHK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7y70:A 77 76 1.0000 0.9870 1.0000 3.13e-52 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
2 7wul:A 70 70 0.7763 0.8429 0.8429 3.63e-41 7wuk:A, 7wum:A, 7wun:A
3 3ny1:A 73 73 0.4605 0.4795 0.4795 3.60e-19 3ny1:B, 5tdc:A, 5tdc:C
4 7mex:A 1737 71 0.3684 0.0161 0.3944 1.63e-11 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
5 3ny2:D 73 72 0.3553 0.3699 0.3750 1.57e-09 3ny2:A, 3ny2:B, 3ny2:C, 3ny2:E, 3ny2:F, 3ny2:G, 3ny2:H, 3ny3:A, 5tda:A, 5tdb:A, 5tdd:A, 5um3:A
6 7yrb:A 83 49 0.2632 0.2410 0.4082 0.007 5vmd:A, 5vmd:C, 5vmd:B, 5vmd:D
7 4n4j:A 497 29 0.1842 0.0282 0.4828 0.29 4n4k:A, 4n4l:A, 4n4m:A, 4rwm:A
8 6cw3:E 120 52 0.2368 0.1500 0.3462 0.50 6cw2:C
9 7mju:A 184 25 0.1711 0.0707 0.5200 1.2 5dag:A, 5dah:B, 5dah:A
10 6cw3:G 92 45 0.2105 0.1739 0.3556 1.5
11 1r3n:A 438 28 0.1316 0.0228 0.3571 3.2 1r3n:B, 1r3n:C, 1r3n:D, 1r3n:E, 1r3n:F, 1r3n:G, 1r3n:H, 1r43:A, 1r43:B, 2v8d:A, 2v8d:B, 2v8g:A, 2v8g:B, 2v8g:C, 2v8g:D, 2v8h:A, 2v8h:B, 2v8h:C, 2v8h:D, 2v8v:A, 2v8v:B, 2v8v:C, 2v8v:D, 2vl1:A, 2vl1:B, 2vl1:C, 2vl1:D
12 8xmd:B 1061 21 0.1184 0.0085 0.4286 3.7 7eu0:B, 8hyj:B, 8xme:B
13 8xmc:B 1082 21 0.1184 0.0083 0.4286 3.8 7eu1:B, 8xmb:B
14 4oau:C 692 43 0.1711 0.0188 0.3023 5.6 4g8l:A, 4g8l:B, 4g8l:C, 4g8l:D, 4oav:B, 4oav:D, 1wdy:A
15 8j9q:A 73 58 0.2500 0.2603 0.3276 8.1 8j9q:B, 8j9q:C, 8j9r:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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