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BioLiP
>protein
RLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRL

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pfc:L 70 67 1.0000 0.9571 1.0000 4.91e-44 8j49:A, 8pfc:B, 8pfc:D, 8pfc:F, 8pfc:H, 8pfc:J, 8pfc:N, 8pfc:P
2 1ul4:A 81 67 0.7612 0.6296 0.7612 1.04e-33
3 1wj0:A 58 55 0.5224 0.6034 0.6364 1.83e-23
4 8j4b:D 65 63 0.5224 0.5385 0.5556 1.89e-23 8j4b:B
5 1ul5:A 86 65 0.5224 0.4070 0.5385 1.59e-20
6 3qbe:A 352 42 0.1940 0.0369 0.3095 5.0 3qbd:A, 3qbd:B
7 7ly7:B 329 52 0.2090 0.0426 0.2692 5.0 7ly4:A, 7ly4:D, 7ly5:B, 7ly6:A
8 4e6x:C 305 25 0.1493 0.0328 0.4000 7.0 4e6x:B
9 7mdf:A 453 25 0.1493 0.0221 0.4000 7.2 4e6w:A, 4e6w:B, 4e6w:C, 7mdc:A
10 4b21:A 207 25 0.1493 0.0483 0.4000 8.7 4b22:A, 4b23:A, 4b24:A, 4hsb:A
11 5n6u:A 811 29 0.1642 0.0136 0.3793 9.8 5n6u:B, 5n6u:C, 5n6u:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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