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BioLiP
>protein
RLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRR

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pfc:L 70 66 1.0000 0.9429 1.0000 3.05e-43 8j49:A, 8pfc:B, 8pfc:D, 8pfc:F, 8pfc:H, 8pfc:J, 8pfc:N, 8pfc:P
2 1ul4:A 81 66 0.7576 0.6173 0.7576 4.79e-33
3 1wj0:A 58 55 0.5303 0.6034 0.6364 1.81e-23
4 8j4b:D 65 63 0.5303 0.5385 0.5556 2.07e-23 8j4b:B
5 1ul5:A 86 64 0.5152 0.3953 0.5312 7.74e-20
6 3qbe:A 352 42 0.1970 0.0369 0.3095 4.8 3qbd:A, 3qbd:B
7 7ly7:B 329 52 0.2121 0.0426 0.2692 4.8 7ly4:A, 7ly4:D, 7ly5:B, 7ly6:A
8 4e6x:C 305 25 0.1515 0.0328 0.4000 6.7 4e6x:B
9 7mdf:A 453 25 0.1515 0.0221 0.4000 6.9 4e6w:A, 4e6w:B, 4e6w:C, 7mdc:A
10 4b21:A 207 25 0.1515 0.0483 0.4000 8.8 4b22:A, 4b23:A, 4b24:A, 4hsb:A
11 5n6u:A 811 29 0.1667 0.0136 0.3793 9.4 5n6u:B, 5n6u:C, 5n6u:D
12 2ct2:A 88 45 0.1818 0.1364 0.2667 9.8 5fey:A, 5fey:B
13 3geh:A 442 52 0.2273 0.0339 0.2885 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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