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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RLCDVLQVLWEEQDQCLQELSREQTGDLGTEQPVPGCEGMWDNISCWPSSVPGRMVEVECPRFLRMLTSRNGSLFRNCTQ
DGWSETFPRPNLACGVNVNDSSNEKRHSYLLKLKVMYTVGYSSSLVMLLVALGILCAFRRLHCTRNYIHMHLFVSFILRA
LSNFIKDAVLFSSDDVTYCDAHRAGCKLVMVLFQYCIMANYSWLLVEGLYLHTLLAISFFSERKYLQGFVAFGWGSPAIF
VALWAIARHFLEDVGCWDINANASIWWIIRGPVILSILINFILFINILRILMRKLRTQETRGNEVSHYKRLARSTLLLIP
LFGIHYIVFAFSPEDAMEIQLFFELALGSFQGLVVAVLYCFLNGEVQLEVQKKWQQWHL

The query sequence (length=379) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wzg:R 379 379 1.0000 1.0000 1.0000 0.0 7d3s:R, 6wi9:R
2 8e3y:R 372 380 0.5303 0.5403 0.5289 9.65e-145 8e3z:R, 6vn7:R
3 8e3x:R 362 368 0.5224 0.5470 0.5380 2.22e-143 6m1i:A, 6p9y:R
4 6lpb:R 331 367 0.4828 0.5529 0.4986 1.68e-121
5 7vqx:R 361 370 0.4908 0.5152 0.5027 1.74e-120 7wbj:R
6 6nbh:R 379 383 0.4697 0.4697 0.4648 1.77e-109 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
7 7lci:R 393 381 0.4354 0.4198 0.4331 1.18e-96 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
8 7dur:R 371 371 0.4327 0.4420 0.4420 1.29e-95 7lll:R, 7lly:R
9 7f16:R 376 359 0.4142 0.4176 0.4373 2.19e-91
10 7cz5:R 269 272 0.3562 0.5019 0.4963 9.02e-91 7v9m:R
11 7vvo:R 302 323 0.3905 0.4901 0.4582 4.04e-90 8gw8:R
12 6whc:R 371 375 0.4195 0.4286 0.4240 1.75e-85 8jru:R, 8wg8:R
13 7fin:R 380 354 0.3958 0.3947 0.4237 5.52e-83 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
14 6wpw:R 398 384 0.4142 0.3945 0.4089 1.68e-78 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
15 8jrv:R 319 264 0.3509 0.4169 0.5038 6.39e-74
16 6fj3:A 562 292 0.3456 0.2331 0.4486 1.50e-70 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
17 6fj3:A 562 92 0.1055 0.0712 0.4348 1.87e-18 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
18 6ln2:A 437 450 0.4142 0.3593 0.3489 5.61e-67 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
19 7tyn:R 373 348 0.2850 0.2895 0.3103 4.53e-55 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
20 6pb1:P 281 274 0.2612 0.3523 0.3613 3.11e-50
21 6pb0:R 281 286 0.2691 0.3630 0.3566 4.70e-50 8gtg:A, 8gti:A, 8gtm:A, 4k5y:C
22 5ee7:A 416 157 0.1979 0.1803 0.4777 1.49e-45
23 5ee7:A 416 116 0.1451 0.1322 0.4741 1.25e-14
24 5xez:B 499 162 0.2032 0.1543 0.4753 2.05e-43 5xf1:B
25 5xez:B 499 225 0.2164 0.1643 0.3644 5.92e-25 5xf1:B
26 7knu:R 341 347 0.2586 0.2874 0.2824 2.90e-41
27 5yqz:R 558 154 0.1979 0.1344 0.4870 1.26e-39 5xez:A, 5xf1:A
28 5yqz:R 558 225 0.2137 0.1452 0.3600 4.09e-24 5xez:A, 5xf1:A
29 6kjv:B 424 160 0.1847 0.1651 0.4375 7.56e-39 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
30 6kjv:B 424 119 0.1689 0.1509 0.5378 2.77e-29 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
31 4z9g:A 421 155 0.1478 0.1330 0.3613 2.70e-22 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
32 4z9g:A 421 114 0.1029 0.0926 0.3421 1.87e-08 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
33 3n94:A 466 92 0.1029 0.0837 0.4239 2.15e-16
34 2xdg:A 89 89 0.0844 0.3596 0.3596 2.29e-14 2xdg:B
35 7xkd:R 261 205 0.1319 0.1916 0.2439 1.73e-08 7wui:R, 7xke:R, 7xkf:R
36 2jnd:A 79 57 0.0554 0.2658 0.3684 3.53e-05
37 3l2j:A 484 55 0.0528 0.0413 0.3636 1.09e-04 3c4m:A, 3c4m:B, 3h3g:A, 3l2j:B
38 3n96:A 473 59 0.0554 0.0444 0.3559 0.006 3ehs:A, 3eht:A, 3n93:B, 3n93:A, 3n95:C, 3n95:D, 3n95:A, 3n95:B, 3n96:C, 3n96:D, 3n96:B
39 4yb6:A 296 66 0.0528 0.0676 0.3030 0.063 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
40 4dlq:A 353 163 0.1003 0.1076 0.2331 0.22
41 3ehu:A 441 41 0.0422 0.0363 0.3902 0.30 3ehu:B
42 7dah:C 288 49 0.0369 0.0486 0.2857 1.2 7dah:F
43 1h3d:A 288 56 0.0422 0.0556 0.2857 1.5 1q1k:A
44 7d76:R 265 176 0.1003 0.1434 0.2159 2.6 7d77:R
45 6j6g:C 920 106 0.0712 0.0293 0.2547 8.4 7b9v:C, 6bk8:B, 7dco:C, 5gm6:C, 5gmk:C, 6j6h:C, 6j6n:C, 6j6q:C, 3jcm:H, 6teo:A, 6teo:C, 5wsg:C, 5y88:C, 5ylz:C, 5zwm:C, 5zwo:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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