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BioLiP
>protein
RLCDVLQVLWEEQDQCLQELSREQTGDLGTEQPVPGCEGMWDNISCWPSSVPGRMVEVECPRFLRMLTSRNGSLFRNCTQ
DGWSETFPRPNLACGVNVNDSSNEKRHSYLLKLKVMYTVGYSSSLVMLLVALGILCAFRRLHCTRNYIHMHLFVSFILRA
LSNFIKDAVLFRAGCKLVMVLFQYCIMANYSWLLVEGLYLHTLLAISFFSERKYLQGFVAFGWGSPAIFVALWAIARHFL
EDVGCWDINANASIWWIIRGPVILSILINFILFINILRILMRKLRTQETRGNEVSHYKRLARSTLLLIPLFGIHYIVFAF
SPEDAMEIQLFFELALGSFQGLVVAVLYCFLNGEVQLEVQKKWQQWHL

The query sequence (length=368) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wzg:R 379 379 1.0000 0.9710 0.9710 0.0 7d3s:R, 6wi9:R
2 8e3y:R 372 380 0.5408 0.5349 0.5237 1.51e-140 8e3z:R, 6vn7:R
3 8e3x:R 362 368 0.5326 0.5414 0.5326 1.06e-138 6m1i:A, 6p9y:R
4 6lpb:R 331 356 0.4973 0.5529 0.5140 2.84e-124
5 7vqx:R 361 370 0.4973 0.5069 0.4946 5.13e-117 7wbj:R
6 6nbh:R 379 382 0.4755 0.4617 0.4581 6.81e-107 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
7 7lci:R 393 379 0.4402 0.4122 0.4274 1.88e-95 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
8 7dur:R 371 369 0.4375 0.4340 0.4363 2.30e-94 7lll:R, 7lly:R
9 7vvo:R 302 312 0.4022 0.4901 0.4744 5.95e-92 8gw8:R
10 7f16:R 376 359 0.4239 0.4149 0.4345 3.71e-88
11 7cz5:R 269 272 0.3560 0.4870 0.4816 5.98e-85 7v9m:R
12 7fin:R 380 354 0.4103 0.3974 0.4266 4.59e-83 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
13 6whc:R 371 375 0.4293 0.4259 0.4213 1.18e-82 8jru:R, 8wg8:R
14 6wpw:R 398 384 0.4185 0.3869 0.4010 7.22e-76 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
15 6fj3:A 562 282 0.3533 0.2313 0.4610 1.75e-71 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
16 6fj3:A 562 92 0.1087 0.0712 0.4348 1.77e-18 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
17 8jrv:R 319 265 0.3560 0.4107 0.4943 3.44e-71
18 7tyn:R 373 346 0.2962 0.2922 0.3150 8.78e-55 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
19 6pb1:P 281 269 0.2663 0.3488 0.3643 2.37e-49
20 6pb0:R 281 282 0.2717 0.3559 0.3546 3.10e-49 8gtg:A, 8gti:A, 8gtm:A, 4k5y:C
21 5ee7:A 416 157 0.2038 0.1803 0.4777 1.19e-45
22 5ee7:A 416 115 0.1440 0.1274 0.4609 7.42e-14
23 5xez:B 499 162 0.2092 0.1543 0.4753 1.90e-43 5xf1:B
24 5xez:B 499 225 0.2147 0.1583 0.3511 1.27e-22 5xf1:B
25 7knu:R 341 345 0.2772 0.2991 0.2957 1.08e-40
26 5yqz:R 558 154 0.2038 0.1344 0.4870 1.25e-39 5xez:A, 5xf1:A
27 5yqz:R 558 225 0.2120 0.1398 0.3467 8.01e-22 5xez:A, 5xf1:A
28 6kjv:B 424 160 0.1902 0.1651 0.4375 7.85e-39 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
29 6kjv:B 424 116 0.1685 0.1462 0.5345 9.67e-29 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
30 6ln2:A 437 155 0.1793 0.1510 0.4258 3.68e-37 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
31 6ln2:A 437 214 0.2364 0.1991 0.4065 4.69e-36 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
32 4z9g:A 421 154 0.1522 0.1330 0.3636 2.81e-22 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
33 4z9g:A 421 110 0.1033 0.0903 0.3455 4.89e-08 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
34 3n94:A 466 92 0.1060 0.0837 0.4239 1.77e-16
35 2xdg:A 89 89 0.0870 0.3596 0.3596 2.08e-14 2xdg:B
36 7xkd:R 261 205 0.1359 0.1916 0.2439 1.92e-08 7wui:R, 7xke:R, 7xkf:R
37 2jnd:A 79 57 0.0571 0.2658 0.3684 2.73e-05
38 3l2j:A 484 55 0.0543 0.0413 0.3636 9.50e-05 3c4m:A, 3c4m:B, 3h3g:A, 3l2j:B
39 3n96:A 473 59 0.0571 0.0444 0.3559 0.005 3ehs:A, 3eht:A, 3n93:B, 3n93:A, 3n95:C, 3n95:D, 3n95:A, 3n95:B, 3n96:C, 3n96:D, 3n96:B
40 4yb6:A 296 66 0.0543 0.0676 0.3030 0.063 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
41 3ehu:A 441 41 0.0435 0.0363 0.3902 0.30 3ehu:B
42 7dah:C 288 49 0.0380 0.0486 0.2857 1.1 7dah:F
43 1h3d:A 288 56 0.0435 0.0556 0.2857 1.5 1q1k:A
44 4dlq:A 353 141 0.0897 0.0935 0.2340 1.6
45 7d76:R 265 176 0.1033 0.1434 0.2159 2.8 7d77:R
46 6j6g:C 920 106 0.0734 0.0293 0.2547 8.5 7b9v:C, 6bk8:B, 7dco:C, 5gm6:C, 5gmk:C, 6j6h:C, 6j6n:C, 6j6q:C, 3jcm:H, 6teo:A, 6teo:C, 5wsg:C, 5y88:C, 5ylz:C, 5zwm:C, 5zwo:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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