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BioLiP
>protein
RKWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEFWAKEKLVALDNKNM
SYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEGMTESAFTEILQHWATEIGQKIEEVCSA

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vgs:A 153 147 0.9669 0.9542 0.9932 6.38e-109 5gte:A, 5gte:B, 5gtg:A, 6ies:A, 6ies:B
2 5e4m:A 177 134 0.2119 0.1808 0.2388 0.006 5e4b:A, 5e4b:B, 5e4m:B
3 5vil:A 271 41 0.1192 0.0664 0.4390 1.0 4bf2:A, 4bf2:B, 4bhn:A, 4bhn:B, 4bib:A, 4bib:B, 4bic:A, 4bic:B, 4bid:A, 4bid:B, 4bie:A, 4bie:B, 2clq:A, 2clq:B, 6e2m:A, 6e2n:A, 6e2o:A, 6e2o:B, 7mu6:A, 7mu6:B, 7mu7:A, 7mu7:B, 6oyw:A, 6oyw:B, 6oyw:C, 6oyw:D, 5uor:B, 5uox:A, 5uox:B, 5up3:A, 5v19:A, 5v19:B, 5v24:B, 5vil:B, 5vil:C, 5vil:D, 5vio:A, 5vio:B, 5vio:D, 6vre:A, 6vre:B, 3vw6:A, 3vw6:B, 6xih:A
4 8h3j:A 162 108 0.1921 0.1790 0.2685 1.2
5 3fp0:A 511 42 0.0728 0.0215 0.2619 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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