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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RKVVVSALQFACTDDVSTNVTTAERLVRAAHKQGANIVLIQELFEGYYFCQAQREDFIQRAKPYKDHPTIMRLQKLAKEL
GVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYRKSHIPDGPGYEEKFYFNPGDTGFKVFQTKYAKIGVAICWDQWFPEA
ARAMALQGAEILFYPTAIGSEPHDQSIDSRDHWKRVMQGHAGANLVPLVASNRIGNEIIETEHGKSEIKFYGNSFIAGPT
GEIVSIADDKEEAVLIAEFNLDKIKSMRHCWGVFRDRRPDLYKVLLTLDGKNPVL

The query sequence (length=295) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5h8i:C 301 295 1.0000 0.9801 1.0000 0.0 5h8i:B, 5h8i:D, 5h8i:E, 5h8i:F, 5h8i:G, 5h8i:J, 5h8i:K, 5h8i:L, 5h8i:M, 5h8i:N, 5h8i:O, 5h8j:B, 5h8j:C, 5h8j:D, 5h8j:E, 5h8j:F, 5h8j:G, 5h8j:J, 5h8j:K, 5h8j:L, 5h8j:M, 5h8j:N, 5h8j:O, 5h8l:B, 5h8l:C, 5h8l:D, 5h8l:E, 5h8l:F, 5h8l:G, 5h8l:J, 5h8l:K, 5h8l:L, 5h8l:M, 5h8l:N, 5h8l:O
2 6ypa:B 269 271 0.3288 0.3606 0.3579 4.98e-45 7ovg:A, 7ovg:B, 6ypa:A, 6ypa:C, 6ypa:D
3 3klc:A 261 267 0.3186 0.3602 0.3521 3.48e-44 3klc:B
4 8hpc:C 303 287 0.2814 0.2739 0.2892 4.01e-27 8hpc:A, 8hpc:B, 8hpc:D, 8hpc:E, 8hpc:F, 8hpc:G, 8hpc:H, 1uf5:A, 1uf5:B, 1uf7:A, 1uf7:B, 1uf8:A, 1uf8:B
5 4hg3:A 304 306 0.2339 0.2270 0.2255 2.59e-16 4hg3:B, 4hg3:C, 4hg3:D, 4hg5:A, 4hg5:B, 4hg5:C, 4hg5:D, 4hgd:A, 4hgd:B, 4hgd:C, 4hgd:D
6 5kha:A 526 254 0.2237 0.1255 0.2598 1.42e-12 5kha:B
7 4izt:A 263 214 0.1831 0.2053 0.2523 5.50e-10 4izs:A, 4izu:A, 4izv:A, 4izw:A, 5ny7:A, 5nyb:A, 5nyc:A, 5nye:A
8 4gyl:A 340 176 0.1525 0.1324 0.2557 1.50e-06 4gyn:A, 4kzf:A
9 2e2l:A 317 205 0.1864 0.1735 0.2683 5.48e-06 2e2l:C, 2e2l:F
10 8uxu:A 317 239 0.1763 0.1640 0.2176 4.62e-04 8uxu:B, 8uxu:C, 8uxu:D, 8uxu:E, 8uxu:F, 8uxu:G, 8uxu:H, 8uxu:I, 8uxu:J, 8uxu:K, 8uxu:L, 8uxu:M, 8uxu:N
11 4cyg:A 463 105 0.0814 0.0518 0.2286 0.19 4cyg:B, 7slv:A, 7slx:A, 7sly:A
12 8hk0:B 379 72 0.0746 0.0580 0.3056 0.30 8hk0:A
13 3seq:D 650 130 0.1119 0.0508 0.2538 0.46 3dla:B, 3seq:C, 3sez:D, 3sez:C, 3syt:D, 3szg:B
14 6ofc:B 669 130 0.1119 0.0493 0.2538 0.52 3dla:A, 3dla:D, 3dla:C, 6ofc:A, 6ofc:D, 6ofc:C, 3seq:A, 3seq:B, 3sez:A, 3sez:B, 3syt:A, 3syt:B, 3syt:C, 3szg:A, 3szg:D, 3szg:C
15 3mmg:A 217 93 0.0814 0.1106 0.2581 0.55 3mmg:B
16 8ovh:A 400 33 0.0475 0.0350 0.4242 1.5 8ovh:B, 8ovh:C, 8ovh:D
17 3bfk:B 179 102 0.0881 0.1453 0.2549 4.7 3bfk:A, 3bfk:C, 3bfk:D, 3bfk:E
18 8gk3:L 440 39 0.0373 0.0250 0.2821 5.3
19 7kpm:A 255 56 0.0712 0.0824 0.3750 5.4
20 8gk3:A 473 39 0.0373 0.0233 0.2821 6.0 8gk3:J, 8gk3:B, 8gk3:I, 8gk3:C, 8gk3:K, 8gk3:D, 8gk3:E, 8gk3:F, 8gk3:G, 8gk3:H, 7mk8:A, 7mk8:B, 7uff:A
21 6cin:B 1169 30 0.0508 0.0128 0.5000 7.6 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
22 4ovd:A 422 82 0.0712 0.0498 0.2561 8.3
23 7wbt:A 899 68 0.0678 0.0222 0.2941 8.5 7wbt:B, 7wbu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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