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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RKTRHDPPAKSKVGRVQTPPAVDPAEFFVLTERYRQYRETVRALRLEFTLEVRRKLHEARAGVLAERKAQQAITEHRELM
AWNRDENRRMQELRIARLQLEAQAQEVQKAEAQAQRAQEEQAWVQLKEQEVLKLQEEAKNFITRENLEARIEEALDSPKS
YNWAVTKEGQVVRN

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pnt:U 174 174 1.0000 1.0000 1.0000 3.34e-123 7pnu:U, 7pnv:U, 7pnw:U
2 5aj3:d 177 173 0.7701 0.7571 0.7746 2.99e-91 5aj4:Ad, 6gaw:Ad, 6gaz:Ad, 7nqh:Ad, 7nql:Ad, 7nsi:Ad, 7nsj:Ad, 8oin:AU, 8oip:AU, 6ydp:Ad, 6ydw:Ad
3 3jd5:d 176 172 0.7759 0.7670 0.7849 3.35e-86 6neq:d, 6nf8:d
4 7l08:AU 177 173 0.7126 0.7006 0.7168 3.76e-79 7a5f:U6, 7a5g:U6, 7a5i:U6, 7a5k:U6, 8any:AU, 8csp:U, 8csq:U, 8csr:U, 8css:U, 8cst:U, 8csu:U, 3j9m:AU, 8k2a:Sb, 6nu2:AU, 6nu3:AU, 7og4:AU, 8oir:AU, 8ois:AU, 7p2e:U, 7pnx:U, 7pny:U, 7pnz:U, 7po0:U, 7po1:U, 7po2:U, 7po3:U, 7qi4:AU, 7qi5:AU, 7qi6:AU, 8qrk:U, 8qrl:U, 8qrm:U, 8qrn:U, 6rw4:U, 6rw5:U, 6vlz:AU, 6vmi:AU, 8xt0:Sb, 8xt2:Sb, 6zm5:AU, 6zm6:AU, 6zs9:AU, 6zsa:AU, 6zsb:AU, 6zsc:AU, 6zsd:AU, 6zse:AU, 6zsg:AU
5 7pkq:w 155 34 0.0747 0.0839 0.3824 0.12
6 6zu5:LE0 179 61 0.0920 0.0894 0.2623 0.28
7 4nj5:A 482 54 0.1149 0.0415 0.3704 0.89
8 8bgw:A 750 44 0.1092 0.0253 0.4318 2.2 8bgw:B, 6qq5:A, 6qq5:B, 6qq6:A, 6qq6:B, 6t6v:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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