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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RKTRHDPLAKSKIERVNMPPAVDPAEFFVLMERYQHYRQTVRALRMEFVSEVQRKVHEARAGVLAERKALKDAAEHRELM
AWNQAENRRLHELRIARLRQEEREQEQRQALEQARKAEEVQAWAQRKEREVLQLQEEVKNFITRENLEARVEAALDSRKN
YNWAITREGLVVRP

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l08:AU 177 174 1.0000 0.9831 1.0000 2.50e-122 7a5f:U6, 7a5g:U6, 7a5i:U6, 7a5k:U6, 8any:AU, 8csp:U, 8csq:U, 8csr:U, 8css:U, 8cst:U, 8csu:U, 3j9m:AU, 8k2a:Sb, 6nu2:AU, 6nu3:AU, 7og4:AU, 8oir:AU, 8ois:AU, 7p2e:U, 7pnx:U, 7pny:U, 7pnz:U, 7po0:U, 7po1:U, 7po2:U, 7po3:U, 7qi4:AU, 7qi5:AU, 7qi6:AU, 8qrk:U, 8qrl:U, 8qrm:U, 8qrn:U, 6rw4:U, 6rw5:U, 6vlz:AU, 6vmi:AU, 8xt0:Sb, 8xt2:Sb, 6zm5:AU, 6zm6:AU, 6zs9:AU, 6zsa:AU, 6zsb:AU, 6zsc:AU, 6zsd:AU, 6zse:AU, 6zsg:AU
2 5aj3:d 177 174 0.7931 0.7797 0.7931 1.54e-92 5aj4:Ad, 6gaw:Ad, 6gaz:Ad, 7nqh:Ad, 7nql:Ad, 7nsi:Ad, 7nsj:Ad, 8oin:AU, 8oip:AU, 6ydp:Ad, 6ydw:Ad
3 3jd5:d 176 174 0.8161 0.8068 0.8161 1.07e-87 6neq:d, 6nf8:d
4 7pnt:U 174 173 0.7126 0.7126 0.7168 1.01e-82 7pnu:U, 7pnv:U, 7pnw:U
5 8pj1:u 706 90 0.1954 0.0482 0.3778 0.34 8pj2:u, 8pj3:u, 8pj4:u, 8pj5:u, 8pj6:u, 8rg0:u, 6w2s:1, 6w2t:1
6 6zu5:LE0 179 49 0.0920 0.0894 0.3265 1.6
7 4gba:B 206 68 0.1034 0.0874 0.2647 3.3 4gba:A
8 7vfs:A 1266 78 0.1437 0.0197 0.3205 5.4 7vfu:A, 7vfv:A, 7vfw:A
9 6vsu:E 318 63 0.1149 0.0629 0.3175 6.0 6vsu:A, 6vsu:B, 6vsu:C, 6vsu:D, 6vsu:F, 6vsu:G, 6vsu:I, 6vsu:H, 6vsu:J, 6vsu:K, 6vsu:L, 6vsu:M, 6vsu:N, 6vsu:O, 6vsu:P, 6vsu:Q, 6vsu:R, 6vsu:S, 6vsu:T, 6vsu:U, 6vsu:V, 6vsu:W, 6vsu:X
10 5k3j:A 662 51 0.0920 0.0242 0.3137 6.6 5k3j:B
11 5mrc:OO 238 105 0.1839 0.1345 0.3048 8.5 8d8j:O, 8d8k:O, 8d8l:O, 5mre:OO, 5mrf:OO, 8om2:O, 8om3:O, 8om4:O
12 7mix:A 1326 75 0.1494 0.0196 0.3467 9.6 7miy:A
13 6xyw:Bv 149 134 0.2471 0.2886 0.3209 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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