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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RKRMRNRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5t01:A 62 52 0.9808 0.8226 0.9808 1.30e-28 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
2 5vpe:D 67 52 0.8846 0.6866 0.8846 1.16e-26 5vpe:B, 5vpf:B, 5vpf:D
3 5fv8:E 37 32 0.5962 0.8378 0.9688 5.71e-15
4 7x5e:B 106 38 0.3462 0.1698 0.4737 2.63e-05 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
5 1t2k:D 61 48 0.3846 0.3279 0.4167 6.53e-05
6 1ysa:C 57 50 0.3846 0.3509 0.4000 0.002 1dgc:A, 2dgc:A, 1ysa:D
7 2wt7:A 63 48 0.3462 0.2857 0.3750 0.040 1a02:F, 1fos:E, 1fos:G, 1s9k:D
8 1gd2:E 65 52 0.3654 0.2923 0.3654 0.12 1gd2:F, 1gd2:G, 1gd2:H
9 1dh3:A 55 44 0.3077 0.2909 0.3636 0.35 1dh3:C, 5zk1:A, 5zko:A, 5zko:C
10 7s7b:F 352 27 0.2115 0.0312 0.4074 1.2 7s7b:B, 7s7c:B
11 6iox:A 339 43 0.2885 0.0442 0.3488 1.3 6iox:B
12 7u0h:T 57 45 0.3077 0.2807 0.3556 1.4
13 6co9:A 295 27 0.2308 0.0407 0.4444 4.1 6coj:A
14 5e9a:B 684 33 0.1923 0.0146 0.3030 4.3 5e9a:A, 5e9a:C, 5e9a:D, 5e9a:E, 5e9a:F
15 1skn:P 74 20 0.1731 0.1216 0.4500 4.9
16 4oo8:A 1301 24 0.1923 0.0077 0.4167 8.3 4zt0:C
17 5vpe:A 67 26 0.2115 0.1642 0.4231 8.5 5vpe:C, 5vpf:A, 5vpf:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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