Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSA
ISMLYLDENEKVVLKNYQDMVVEGCGCR

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6omn:G 108 108 1.0000 1.0000 1.0000 1.48e-79 6omn:E, 6omn:H
2 8bwl:A 105 105 0.5463 0.5619 0.5619 2.15e-41 8bwl:B, 8bwm:A, 8bwm:B, 8bwn:A, 8bwn:B
3 4yci:C 105 105 0.5093 0.5238 0.5238 5.65e-32
4 6y6n:A 116 106 0.4167 0.3879 0.4245 1.24e-27 6y6o:A
5 5tx6:A 88 107 0.2778 0.3409 0.2804 1.90e-06
6 5ean:A 1051 70 0.1574 0.0162 0.2429 0.39 5eaw:A, 5eaw:B, 5eax:A, 5eax:B
7 2a5h:B 410 17 0.0833 0.0220 0.5294 1.0 2a5h:A, 2a5h:D, 2a5h:C
8 6tda:L 596 45 0.1389 0.0252 0.3333 2.7
9 6tda:L 596 45 0.1389 0.0252 0.3333 2.7
10 6k15:H 393 45 0.1389 0.0382 0.3333 2.7 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
11 1n31:A 386 29 0.0926 0.0259 0.3448 3.0 1elq:A, 1elq:B, 1elu:A, 1elu:B, 1n2t:A, 1n2t:B, 1n31:B
12 5euj:E 556 14 0.0648 0.0126 0.5000 3.2 5euj:A, 5euj:B, 5euj:C, 5euj:D, 5euj:F, 5euj:G, 5euj:H, 5euj:I, 5euj:J, 5euj:K, 5euj:L, 5euj:M, 5euj:N, 5euj:O, 5euj:P, 5euj:Q, 5euj:R, 5euj:S, 5euj:T, 5euj:U, 5euj:V, 5euj:W, 5euj:X
13 6zu5:SG0 218 34 0.1111 0.0550 0.3529 3.9
14 8et3:C 353 57 0.1296 0.0397 0.2456 4.4 8e7v:A, 8e7v:B, 8e7v:C, 8e7v:D, 8e7v:E, 8e7v:F, 8e8q:A, 8e8q:B, 8e8q:C, 8e8q:D, 8e8q:E, 8e8q:F, 8e91:A, 8e91:B, 8e91:C, 8e91:D, 8e91:E, 8e91:F, 8et3:A, 8et3:B, 8et3:D, 8et3:E, 8et3:F, 6po1:A, 6po1:B, 6po1:C, 6po1:D, 6po1:E, 6po3:A, 6po3:B, 6po3:C, 6po3:D, 6po3:E, 6po3:F, 6pod:B, 6pod:C, 6pod:D, 6pod:E, 6pod:F, 6pos:B, 6pos:A, 6pos:C, 6pos:D, 6pos:E, 6pos:F, 6pp5:A, 6pp5:B, 6pp5:C, 6pp5:D, 6pp5:E, 6pp6:A, 6pp6:B, 6pp6:C, 6pp6:D, 6pp6:E, 6pp6:F, 6pp7:B, 6pp7:C, 6pp7:D, 6pp7:E, 6pp7:F, 6pp8:B, 6pp8:A, 6pp8:C, 6pp8:D, 6pp8:E, 6pp8:F, 6wrf:B, 6wrf:C, 6wrf:A, 6wrf:D, 6wrf:E, 6wrf:F, 6wsg:B, 6wsg:C, 6wsg:D, 6wsg:E, 6wsg:F
15 8fgw:B 1152 68 0.1852 0.0174 0.2941 4.6 8fh3:B
16 2vbi:A 554 18 0.0741 0.0144 0.4444 4.9 2vbi:B, 2vbi:C, 2vbi:D, 2vbi:E, 2vbi:F, 2vbi:G, 2vbi:H
17 5g5a:A 219 29 0.0926 0.0457 0.3448 5.0 5g5a:B, 5g5a:C, 5g5a:D
18 6vfx:F 321 53 0.1204 0.0405 0.2453 5.8 6vfs:B
19 5kr7:A 340 58 0.1944 0.0618 0.3621 7.1 5fjh:A, 5fjh:B, 5fjk:A, 5kr7:B, 4xdo:A, 4xdo:B, 4xdp:A, 4xdp:B, 2xml:A, 2xml:B
20 6vfx:E 341 65 0.1574 0.0499 0.2615 7.1 6vfs:E, 6vfs:C, 6vfs:D, 6vfx:C, 6vfx:B, 6vfx:D, 6vfx:A
21 6vfs:F 302 53 0.1204 0.0430 0.2453 7.4
22 2isv:A 298 35 0.1111 0.0403 0.3429 7.7 3gak:A
23 3gay:A 319 35 0.1111 0.0376 0.3429 7.7 3gak:B, 3gay:B, 3gb6:A, 3gb6:B, 2isv:B, 2isw:A, 3ohi:A, 3ohi:B
24 7drc:C 906 41 0.1204 0.0143 0.3171 8.0 7drb:C, 7drb:D, 7w3v:C, 7w3x:C
25 2zg3:A 210 22 0.0741 0.0381 0.3636 9.5 2zg1:A
26 3hws:D 316 53 0.1111 0.0380 0.2264 9.6 3hws:B, 3hws:E, 4i4l:A, 4i81:A, 4i81:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218