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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMV
KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTI
DRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSK
VGPMPWLGPQTDESIKGLCERGRKNILLVPIARTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADL
VHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL

The query sequence (length=359) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3aqi:A 359 359 0.9916 0.9916 0.9916 0.0 3aqi:B, 7ct7:A, 7ct7:B, 7ctc:A, 7ctc:D, 4f4d:A, 4f4d:B, 3hcn:A, 3hcn:B, 3hco:A, 3hco:B, 3hcp:A, 3hcp:B, 3hcr:A, 3hcr:B, 1hrk:A, 1hrk:B, 2hrc:A, 2hrc:B, 2hre:A, 2hre:B, 2hre:C, 2hre:D, 4kla:A, 4kla:B, 4klc:A, 4klc:B, 4klr:A, 4klr:B, 4kmm:A, 4kmm:B, 4mk4:A, 4mk4:B, 2pnj:A, 2pnj:B, 2po5:A, 2po5:B, 2po7:A, 2po7:B, 2qd1:A, 2qd1:B, 2qd1:C, 2qd1:D, 2qd2:A, 2qd2:B, 2qd3:A, 2qd3:B, 2qd4:A, 2qd4:B, 2qd5:A, 2qd5:B, 3w1w:A, 3w1w:B
2 1l8x:B 354 339 0.4791 0.4859 0.5074 2.31e-122
3 2hk6:A 309 327 0.2368 0.2751 0.2599 4.37e-33 1c1h:A, 1c9e:A, 1ld3:A, 3m4z:A, 2q2n:A, 2q2o:A, 2q3j:A
4 8aw7:A 309 326 0.2618 0.3042 0.2883 1.30e-32 8at8:A, 8bbv:A, 9f0f:A, 9f0g:A, 8ofl:A, 8omm:A, 6sv3:A
5 7jrc:A 501 56 0.0390 0.0279 0.2500 1.7 7jru:A, 7jrv:A, 7jrw:A, 7js5:A, 7js7:A, 7js7:B
6 1oqu:C 302 142 0.0975 0.1159 0.2465 3.3 3dhz:A, 3dhz:B, 1kgn:A, 1kgn:B, 1kgn:C, 1kgn:D, 1kgo:A, 1kgo:B, 1kgo:C, 1kgo:D, 1kgp:A, 1kgp:B, 1kgp:C, 1kgp:D, 3mjo:A, 3mjo:B, 1oqu:A, 1oqu:B, 1oqu:D
7 7z4m:A 497 76 0.0529 0.0382 0.2500 3.5 6ksh:A, 6ksh:B, 6ksh:C, 6ksh:D, 7z4n:A, 7z4r:A
8 6m29:A 122 61 0.0474 0.1393 0.2787 4.1 8i57:A, 8i57:B, 8i58:A, 8i58:B, 6m27:A, 6m27:B, 6m28:A, 6m28:B, 6m29:B, 6m2e:A, 6m2e:B, 6m2f:A, 6m2f:B, 6m2g:A, 6m2g:B, 6m2h:A, 6m2h:B
9 8xlp:2 173 68 0.0557 0.1156 0.2941 4.7 8wm6:c, 8wmj:c, 8wmv:c, 8wmw:c, 8xlp:O
10 4uhm:A 435 46 0.0334 0.0276 0.2609 5.9 4uhn:A, 4uho:A
11 6nab:B 497 48 0.0362 0.0262 0.2708 6.0 6nab:A, 6uyh:A, 6uyh:B
12 5myj:BG 176 109 0.0696 0.1420 0.2294 6.1
13 4oxd:A 185 65 0.0529 0.1027 0.2923 8.3 4d0y:A, 4d0y:B, 4nt9:B, 4nt9:A, 4nt9:C, 4ox5:A, 4oxd:C, 4oxd:B, 4oxd:E, 4oxd:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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