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BioLiP
>protein
RKLKIGITCYPSVGGSGIIATELGKQLAEKGHEIHFITSSTYHPNIHFHEVEVNQYAVFKYPPYDLTLASKIAEVAEREN
LDIIHAHYALPHAVCAYLAKQMLKRNIGIVTTLHGTDITVLGYDPSLKDLIRFAIESSDRVTAVSSALAAETYDLIKPEK
KIETIYNFIKNTAAIKEKHGILPDEKVVIHVSNFRKVKRVQDVIRVFRNIAGKTKAKLLLVGDGPEKSTACELIRKYGLE
DQVLMLGNQDRVEDLYSISDLKLLLSEKESFGLVLLEAMACGVPCIGTNIGGIPEVIKNNVSGFLVDVGDVTAATARAMS
ILEDEQLSNRFTKAAIEMLENEFSSKKIVSQYEQIYADLAE

The query sequence (length=361) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5d00:A 361 361 1.0000 1.0000 1.0000 0.0 5d00:B, 5d01:A, 5d01:B
2 3mbo:E 375 371 0.6427 0.6187 0.6253 1.91e-169 3mbo:A, 3mbo:C, 3mbo:H
3 6n1x:A 377 370 0.5596 0.5358 0.5459 2.84e-139 6d9t:A
4 6kih:A 400 383 0.2548 0.2300 0.2402 2.33e-19 6kih:C, 6kih:D, 6kih:E, 6kih:F, 6kih:H, 6kih:I, 6kih:K, 6kih:L, 6kih:B, 6kih:G, 6kih:J
5 7ec3:A 500 257 0.1828 0.1320 0.2568 1.56e-15 7ec3:C, 7ec6:A, 7ec7:A, 7ec7:B, 7vfl:A, 7vfl:C, 7vfm:A, 7vfm:C, 7vfn:A, 7vfo:A, 7vfo:B
6 3c4q:A 393 309 0.2105 0.1934 0.2460 1.78e-13 3c4q:B, 3c4v:A, 3c4v:B
7 2xa2:A 412 196 0.1662 0.1456 0.3061 3.82e-13 2xa2:B, 2xa9:A, 2xa9:B, 2xmp:A, 2xmp:B
8 7fga:B 344 376 0.2548 0.2674 0.2447 1.53e-12 7fg9:A, 7fg9:B, 7fga:D, 7fga:A, 7fga:C
9 8dqd:A 370 177 0.1385 0.1351 0.2825 3.65e-12 8dvw:A, 8dvz:A
10 4wad:A 498 255 0.1662 0.1205 0.2353 2.42e-11 4x6l:A, 4x6l:B, 4x6l:C, 4x7m:A, 4x7m:B, 4x7r:A, 4x7r:B
11 3s27:H 797 270 0.2078 0.0941 0.2778 4.07e-11 3s27:A, 3s27:B, 3s27:C, 3s27:D, 3s27:E, 3s27:F, 3s27:G, 3s28:A, 3s28:B, 3s28:C, 3s28:D, 3s28:E, 3s28:F, 3s28:G, 3s28:H, 3s29:A, 3s29:B, 3s29:C, 3s29:D, 3s29:E, 3s29:F, 3s29:G, 3s29:H
12 8p1x:AAA 492 230 0.1524 0.1118 0.2391 7.71e-11 8p20:AAA, 8p20:BBB, 8p20:CCC, 8p20:DDD, 7qd7:AAA, 7qh9:AAA, 7qh9:BBB, 7qh9:CCC, 7qh9:DDD
13 3oka:A 378 322 0.2271 0.2169 0.2547 4.91e-09 3oka:B, 3okc:A, 3okp:A
14 4xsu:A 368 179 0.1413 0.1386 0.2849 8.87e-09 4xsp:A, 4xsr:B, 4xsr:A, 4xsu:B
15 2gej:A 361 151 0.1302 0.1302 0.3113 1.01e-07 2gek:A, 4n9w:A
16 5n80:A 358 191 0.1440 0.1453 0.2723 2.01e-07 6y6i:A
17 6zn1:AAA 400 189 0.1357 0.1225 0.2593 7.78e-07 6zjh:AAA, 6zmz:AAA
18 2bis:A 440 196 0.1440 0.1182 0.2653 2.83e-06 2bis:C, 3fro:B, 3l01:A, 3l01:B
19 7w41:A 484 96 0.0914 0.0682 0.3438 3.06e-06
20 6hlp:A 485 96 0.0914 0.0680 0.3438 3.26e-06 6e59:A, 6hll:A, 6hlo:A
21 6tpn:A 510 96 0.0914 0.0647 0.3438 3.89e-06 4s0v:A, 6tpg:A, 6tpj:A, 6tpj:B, 5wqc:A, 5ws3:A
22 4pqg:A 506 88 0.0776 0.0553 0.3182 3.91e-06 4pqg:B
23 6fj3:A 562 96 0.0914 0.0587 0.3438 4.59e-06 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
24 6v9s:A 503 96 0.0914 0.0656 0.3438 5.08e-06 4zj8:A, 4zjc:A
25 5e9u:A 503 136 0.0970 0.0696 0.2574 7.28e-06 5e9u:E
26 2iv7:A 370 153 0.1108 0.1081 0.2614 7.33e-06 2iw1:A
27 6kuw:A 474 96 0.0914 0.0696 0.3438 7.52e-06 6kuw:B
28 7fee:A 486 96 0.0914 0.0679 0.3438 1.05e-05 6kqi:A, 5u09:A
29 8cxo:A 551 96 0.0914 0.0599 0.3438 1.13e-05
30 6me2:A 486 96 0.0914 0.0679 0.3438 1.14e-05 6me3:A, 6me4:A, 6me5:A, 6ps8:A
31 6tpk:A 461 96 0.0914 0.0716 0.3438 1.15e-05 7qvm:R
32 7br3:A 470 96 0.0914 0.0702 0.3438 1.22e-05
33 6lfl:A 471 96 0.0914 0.0701 0.3438 1.24e-05
34 2r66:A 456 98 0.0720 0.0570 0.2653 1.30e-05 2r68:A
35 8qoy:A 1036 91 0.0831 0.0290 0.3297 1.66e-05
36 6w25:A 468 98 0.0914 0.0705 0.3367 1.97e-05 8wky:A, 8wkz:A
37 5zer:A 354 83 0.0886 0.0904 0.3855 4.01e-05 5zer:B, 5zes:A, 5zfk:A, 5zfk:B
38 8b5q:B 365 216 0.1302 0.1288 0.2176 1.70e-04 8b5q:A, 8b5s:A, 8b5s:B, 8b62:A, 8b62:B, 8b63:A, 8b63:B
39 8jjn:C 326 254 0.1579 0.1748 0.2244 0.011 8jjn:A, 8jjn:B, 8jjq:C, 8jjq:A, 8jjq:B, 8jjt:C, 8jjt:A, 8jjt:B, 8rz3:A, 8rz3:B, 8rz3:C
40 6eji:A 360 120 0.0886 0.0889 0.2667 0.021 6eji:B, 6ejj:A, 6ejj:B, 6ejk:A, 6ejk:B
41 2iv3:C 340 153 0.0997 0.1059 0.2353 0.023 2iv3:A, 2iv3:B, 2iv3:D
42 2bi7:A 383 23 0.0332 0.0313 0.5217 0.34 2bi8:A, 3gf4:A, 3gf4:B, 3inr:A, 3inr:B, 3int:A, 3int:B, 3kyb:A, 3kyb:B, 1wam:A
43 3vuf:A 488 119 0.0803 0.0594 0.2437 0.46
44 6zm9:A 129 106 0.0720 0.2016 0.2453 0.48 6zmg:A
45 7epq:A 296 57 0.0554 0.0676 0.3509 0.60 7epq:B
46 6gne:B 494 158 0.0970 0.0709 0.2215 0.75 6gne:A
47 5odc:E 298 137 0.1108 0.1342 0.2920 1.5 5odc:K, 5odh:E, 5odh:K, 5odi:E, 5odi:K, 5odq:E, 5odq:K, 5odr:E, 5odr:K
48 6lsr:1 247 38 0.0443 0.0648 0.4211 1.6
49 7c53:E 93 91 0.0720 0.2796 0.2857 2.0
50 3oy7:A 392 44 0.0416 0.0383 0.3409 2.4 3oy7:B
51 3hqi:A 294 66 0.0609 0.0748 0.3333 2.5 7d3d:A, 7d3d:B, 6f8f:D, 6f8g:A, 6f8g:C, 6f8g:D, 6f8g:B, 3hqh:A, 3hqi:B, 3hql:A, 3hql:B, 3hqm:A, 3hqm:B, 3hsv:A, 3hsv:B, 3hu6:A, 3hu6:B, 6i41:A, 6i5p:A, 6i5p:C, 6i5p:E, 6i5p:G, 6i68:A, 6i68:C, 6i68:E, 6i68:G, 6i7a:A, 6i7a:C, 6i7a:E, 6i7a:G, 3ivb:A, 3ivq:A, 3ivq:B, 3ivv:A, 7klz:A, 7klz:B, 7kpk:A, 7lin:A, 7lio:A, 7lio:B, 4o1v:A
52 7dt1:A 846 118 0.0914 0.0390 0.2797 3.3 7dt1:B
53 7jjn:A 514 122 0.0942 0.0661 0.2787 3.3 7jjn:B
54 7aor:h 157 84 0.0637 0.1465 0.2738 4.8 6hiv:CN, 6hiw:CN, 6hiz:CN, 7pua:CN, 7pub:CN, 6sg9:CN, 6sgb:CN
55 4lei:A 375 62 0.0526 0.0507 0.3065 5.4 4lei:B
56 1lxy:A 409 78 0.0665 0.0587 0.3077 5.8 1lxy:B, 1s9r:A, 1s9r:B
57 2d1e:A 243 77 0.0499 0.0741 0.2338 6.6 3ajg:A, 3ajg:B, 3ajh:A, 3ajh:B, 5b4h:A, 5b4i:A, 5b4j:A, 4eoc:A, 4eod:A, 4eoe:A, 3f0l:A, 3f0m:A, 3i8u:X, 3i94:A, 3i95:A, 3nb8:A, 3nb9:A, 4qcd:A, 7yk9:A, 7ykb:A
58 4jyb:A 323 86 0.0582 0.0650 0.2442 7.2 8dpb:A, 8dpb:B, 4jyb:B, 4jyc:D, 4lc1:A, 4lc1:B, 2qm7:A, 2qm7:B
59 8ix9:C 314 28 0.0305 0.0350 0.3929 9.4 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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